BLASTX nr result

ID: Coptis21_contig00020535 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020535
         (447 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635008.1| PREDICTED: DNA replication licensing factor ...    68   9e-10
emb|CBI29412.3| unnamed protein product [Vitis vinifera]               68   9e-10
emb|CAN77381.1| hypothetical protein VITISV_029723 [Vitis vinifera]    68   9e-10
ref|XP_002534164.1| minichromosome maintenance protein, putative...    64   1e-08
ref|XP_003534851.1| PREDICTED: DNA replication licensing factor ...    62   5e-08

>ref|XP_003635008.1| PREDICTED: DNA replication licensing factor MCM6 [Vitis vinifera]
          Length = 812

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 40/72 (55%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
 Frame = -3

Query: 445 QQNQKSAYGSXXXXXXXXXXXXXXXESLIRREGHLIVLDDGREAAEGGEDLSP----RDR 278
           QQN+K+ Y S               ESLIRREGHLIV+DDGR+AA  GED  P    R+ 
Sbjct: 741 QQNEKNNYSSMEEAANEVSKLKAIIESLIRREGHLIVVDDGRQAAAEGEDGRPPSVSRND 800

Query: 277 RILAVAPNYVIE 242
           RILAVAPNYVI+
Sbjct: 801 RILAVAPNYVID 812


>emb|CBI29412.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 40/72 (55%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
 Frame = -3

Query: 445 QQNQKSAYGSXXXXXXXXXXXXXXXESLIRREGHLIVLDDGREAAEGGEDLSP----RDR 278
           QQN+K+ Y S               ESLIRREGHLIV+DDGR+AA  GED  P    R+ 
Sbjct: 751 QQNEKNNYSSMEEAANEVSKLKAIIESLIRREGHLIVVDDGRQAAAEGEDGRPPSVSRND 810

Query: 277 RILAVAPNYVIE 242
           RILAVAPNYVI+
Sbjct: 811 RILAVAPNYVID 822


>emb|CAN77381.1| hypothetical protein VITISV_029723 [Vitis vinifera]
          Length = 807

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 40/72 (55%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
 Frame = -3

Query: 445 QQNQKSAYGSXXXXXXXXXXXXXXXESLIRREGHLIVLDDGREAAEGGEDLSP----RDR 278
           QQN+K+ Y S               ESLIRREGHLIV+DDGR+AA  GED  P    R+ 
Sbjct: 736 QQNEKNNYSSMEEAANEVSKLKAIIESLIRREGHLIVVDDGRQAAAEGEDGRPPSVSRND 795

Query: 277 RILAVAPNYVIE 242
           RILAVAPNYVI+
Sbjct: 796 RILAVAPNYVID 807


>ref|XP_002534164.1| minichromosome maintenance protein, putative [Ricinus communis]
           gi|223525759|gb|EEF28218.1| minichromosome maintenance
           protein, putative [Ricinus communis]
          Length = 713

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 37/71 (52%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
 Frame = -3

Query: 445 QQNQKSAYGSXXXXXXXXXXXXXXXESLIRREGHLIVLDDGRE---AAEGGEDLSPRDRR 275
           QQNQK++Y S               ESLIRREG+LIV+DDGR+     EG      RD R
Sbjct: 643 QQNQKNSYSSVEEAKNEATKVKAIIESLIRREGYLIVVDDGRQPDAEGEGARQSVSRDNR 702

Query: 274 ILAVAPNYVIE 242
           ILAVAPNYV+E
Sbjct: 703 ILAVAPNYVVE 713


>ref|XP_003534851.1| PREDICTED: DNA replication licensing factor MCM6 [Glycine max]
          Length = 863

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
 Frame = -3

Query: 445  QQNQKSAYGSXXXXXXXXXXXXXXXESLIRREGHLIVLDDGREAAEGGEDL-SPRDRRIL 269
            QQN+++ Y S               ESLIRREGHLIV+DDG+ AA   E   +PR+ RIL
Sbjct: 795  QQNERNNYSSMEEVQAEISKIKAIIESLIRREGHLIVVDDGQAAAAAAEPPGAPRNYRIL 854

Query: 268  AVAPNYVIE 242
            AVAPNYVI+
Sbjct: 855  AVAPNYVID 863


Top