BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020487
         (1105 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|2...   354   2e-95
ref|XP_003623530.1| Pentatricopeptide repeat-containing protein ...   345   1e-92
ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containi...   338   2e-90
ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containi...   334   3e-89
ref|XP_002533822.1| pentatricopeptide repeat-containing protein,...   331   2e-88

>ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|222855149|gb|EEE92696.1|
            predicted protein [Populus trichocarpa]
          Length = 506

 Score =  354 bits (909), Expect = 2e-95
 Identities = 173/363 (47%), Positives = 254/363 (69%)
 Frame = +2

Query: 2    AVDMFFKIPSFRCNPXXXXXXXXXXXXCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILI 181
            A+++F++IP FRC P            C+  +G+ LV ++LLKS+ MNIR+EESTF++LI
Sbjct: 132  AIELFYRIPKFRCVPSVYSLNTLISVLCRNSKGLKLVPEILLKSQVMNIRVEESTFQVLI 191

Query: 182  TALCKLKKIGYAIEILDSMSEYGYDPDSTLYSCILSAMCKLRDVSTVEVWGFLEEMRAKG 361
            TALC+++K+G+AIE+L+ M   G+  ++ +YS +LS +C+ +D +  EV GFLE++R  G
Sbjct: 192  TALCRVRKVGFAIEMLNCMVNDGFIVNAEIYSLLLSCLCEQKDATKFEVIGFLEQLRKLG 251

Query: 362  FTPNEVDYANVVSFLVKVGKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAE 541
            F P  VDY+NV+ FLVK  +G+DAL ++  MK DRIKPD+  YT VL GVI   D+ KA+
Sbjct: 252  FFPGMVDYSNVIRFLVKGKRGLDALHVLNHMKSDRIKPDIFCYTMVLHGVIEDKDYLKAD 311

Query: 542  EVFDEMLVLGIVPDVHTYNVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSMYNTLMGAL 721
            E+FDE+LV G+VPD +TYNVY+ GLC QN+ +AG K+VA MEELGCKP++  YN L+  L
Sbjct: 312  ELFDELLVFGLVPDAYTYNVYINGLCKQNNVQAGIKMVASMEELGCKPNLITYNMLVKQL 371

Query: 722  CKVGKVMRAKEVLTKMRLKGLQGNLHSYSILINGSMCEGEVGEACEFWEDMLTRGFVPMS 901
            CKVG++ +A E++ +M LKG+  N+ +Y I+I+G    G++ EAC  +E+ L +G    S
Sbjct: 372  CKVGELSKAGELVREMGLKGIGLNMQTYRIMIDGLASNGKIVEACGLFEEALDKGLCTQS 431

Query: 902  LTCDEMICGLCKLGLNSEALRILKQMVEMNIMPGVSAWEALLSIRQLRLNDTVSLDLEDC 1081
            L  DE+ICGLC   L+ +AL++L++MV  N+ PG  AW+ALL     +L D+V   L   
Sbjct: 432  LMFDEIICGLCHRDLSCKALKLLEKMVGKNVSPGARAWKALLLSSGFKL-DSVETKLFSL 490

Query: 1082 INS 1090
            ++S
Sbjct: 491  VDS 493


>ref|XP_003623530.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355498545|gb|AES79748.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 653

 Score =  345 bits (885), Expect = 1e-92
 Identities = 169/345 (48%), Positives = 242/345 (70%), Gaps = 3/345 (0%)
 Frame = +2

Query: 2    AVDMFFKIPSFRCNPXXXXXXXXXXXXCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILI 181
            AVD+FF+IP FRC P            C ++E + +V  +LLKSR M IRLEES+F +LI
Sbjct: 131  AVDLFFRIPRFRCTPTVCSLNLLLSLLCGKRECLRMVPDILLKSRDMKIRLEESSFWVLI 190

Query: 182  TALCKLKKIGYAIEILDSMSEYGYDPDSTLYSCILSAMCKLRDVSTVE---VWGFLEEMR 352
             ALC++K++ YAI++++ M E GY  D  + S I+S++C+  D+++VE   VWG    MR
Sbjct: 191  KALCRIKRVDYAIKMMNCMVEDGYCLDDKICSLIISSLCEQNDLTSVEALVVWG---NMR 247

Query: 353  AKGFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFD 532
              GF P  +D  N++ FLVK GKGMDAL+++ Q+K D IKPD+V YT VL G++  GD+ 
Sbjct: 248  KLGFCPGVMDCTNMIRFLVKEGKGMDALEILNQLKEDGIKPDIVCYTIVLSGIVKEGDYV 307

Query: 533  KAEEVFDEMLVLGIVPDVHTYNVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSMYNTLM 712
            K +E+FDE+LVLG+VPDV+TYNVY+ GLC QN+F+   K+V  ME+LGCKP+V  YNTL+
Sbjct: 308  KLDELFDEILVLGLVPDVYTYNVYINGLCKQNNFDEALKIVVSMEKLGCKPNVVTYNTLL 367

Query: 713  GALCKVGKVMRAKEVLTKMRLKGLQGNLHSYSILINGSMCEGEVGEACEFWEDMLTRGFV 892
            GALC  G + +AK V+ +MRLKG++ NLH+Y I+++G + +GE+GEAC   E+ML + F 
Sbjct: 368  GALCMSGDLGKAKRVMKEMRLKGVELNLHTYRIMLDGLVGKGEIGEACVLLEEMLEKCFY 427

Query: 893  PMSLTCDEMICGLCKLGLNSEALRILKQMVEMNIMPGVSAWEALL 1027
            P S T D ++  +C+ GL S+AL ++ ++V  +  PG   WEALL
Sbjct: 428  PRSSTFDSIVHQMCQKGLISDALVLMNKIVAKSFDPGAKVWEALL 472


>ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
            mitochondrial-like [Vitis vinifera]
          Length = 505

 Score =  338 bits (866), Expect = 2e-90
 Identities = 169/342 (49%), Positives = 232/342 (67%)
 Frame = +2

Query: 2    AVDMFFKIPSFRCNPXXXXXXXXXXXXCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILI 181
            AVD+FF+IP+FRC P            CKR+EG+ +V Q+LLKS+ MNIRLEES+F IL+
Sbjct: 132  AVDLFFRIPNFRCVPSVYSLNALLYVLCKRREGLVMVPQILLKSQAMNIRLEESSFRILV 191

Query: 182  TALCKLKKIGYAIEILDSMSEYGYDPDSTLYSCILSAMCKLRDVSTVEVWGFLEEMRAKG 361
             ALC++KK  YAI IL+ M   GY  D+ + S ILS++C+ + +S  EV  F+EEMR  G
Sbjct: 192  AALCRIKKHNYAIRILNYMLNDGYAVDAKMCSIILSSLCEQKGLSGDEVLRFMEEMRKLG 251

Query: 362  FTPNEVDYANVVSFLVKVGKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAE 541
            F P  VD  NV+ FLVK G  MDAL + +QMK D IKPD V YT +L+GV   GD++KA+
Sbjct: 252  FYPGRVDCNNVIRFLVKEGMVMDALGVFDQMKTDGIKPDTVSYTMILNGVTADGDYEKAD 311

Query: 542  EVFDEMLVLGIVPDVHTYNVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSMYNTLMGAL 721
            ++FDEMLVLG+VPD+H YNVY+  LC QN+ E G +++A M ELGCKPD   YN L+  +
Sbjct: 312  DLFDEMLVLGVVPDIHAYNVYINSLCKQNNIEEGVRMLASMRELGCKPDYVTYNMLLEGM 371

Query: 722  CKVGKVMRAKEVLTKMRLKGLQGNLHSYSILINGSMCEGEVGEACEFWEDMLTRGFVPMS 901
             KV  +   +E+  +M L+G+Q N  +Y I+++G + +GE+ E+C   E+ML + F    
Sbjct: 372  SKVRDLGGMRELAREMELEGVQWNWETYRIMLDGLVGKGEIDESCSLLEEMLDKYFSCWC 431

Query: 902  LTCDEMICGLCKLGLNSEALRILKQMVEMNIMPGVSAWEALL 1027
             T DE+IC LC+ GL  +AL+++ +MV   I PG  AWEALL
Sbjct: 432  STFDEIICELCQRGLVCKALQLVNKMVRKTIAPGARAWEALL 473



 Score = 60.5 bits (145), Expect = 7e-07
 Identities = 59/230 (25%), Positives = 107/230 (46%), Gaps = 8/230 (3%)
 Frame = +2

Query: 365  TPNEVDYANVVSFLVKVGKGMDALDLMEQM-KLDRIKPDVVVYTCVLDGVITAGDFDKAE 541
            TPN   Y  V+S L +  +      L+ ++ K+++ +    ++T ++     A  F+ A 
Sbjct: 76   TPNA--YRFVISTLTRCRQFHHLPPLLHRLEKVEKFETPEFIFTNLIKVYGNANMFEDAV 133

Query: 542  EVFDEMLVLGIVPDVHTYNVYLKGLCMQNSFEAGFKLVACM----EELGCKPDVSMYNTL 709
            ++F  +     VP V++ N  L  LC +     G  +V  +    + +  + + S +  L
Sbjct: 134  DLFFRIPNFRCVPSVYSLNALLYVLCKRRE---GLVMVPQILLKSQAMNIRLEESSFRIL 190

Query: 710  MGALCKVGKVMRAKEVLTKMRLKGLQGNLHSYSILINGSMCE--GEVG-EACEFWEDMLT 880
            + ALC++ K   A  +L  M   G   +    SI+++ S+CE  G  G E   F E+M  
Sbjct: 191  VAALCRIKKHNYAIRILNYMLNDGYAVDAKMCSIILS-SLCEQKGLSGDEVLRFMEEMRK 249

Query: 881  RGFVPMSLTCDEMICGLCKLGLNSEALRILKQMVEMNIMPGVSAWEALLS 1030
             GF P  + C+ +I  L K G+  +AL +  QM    I P   ++  +L+
Sbjct: 250  LGFYPGRVDCNNVIRFLVKEGMVMDALGVFDQMKTDGIKPDTVSYTMILN 299


>ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
            mitochondrial-like [Glycine max]
          Length = 499

 Score =  334 bits (856), Expect = 3e-89
 Identities = 158/342 (46%), Positives = 237/342 (69%)
 Frame = +2

Query: 2    AVDMFFKIPSFRCNPXXXXXXXXXXXXCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILI 181
            AVD+FF+IP FRC P            C++++ + +V ++LLKS+ MNIR+EESTF +LI
Sbjct: 137  AVDLFFRIPRFRCTPTVCSLNLVLSLLCRKRDCLEMVPEILLKSQHMNIRVEESTFRVLI 196

Query: 182  TALCKLKKIGYAIEILDSMSEYGYDPDSTLYSCILSAMCKLRDVSTVEVWGFLEEMRAKG 361
             ALC++K++GYAI++L+ M E GY  D  + S ++SA+C+ +D+++ E      +MR  G
Sbjct: 197  RALCRIKRVGYAIKMLNFMVEDGYGLDEKICSLVISALCEQKDLTSAEALVVWRDMRKLG 256

Query: 362  FTPNEVDYANVVSFLVKVGKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAE 541
            F P  +DY N++ FLVK G+GMDALD++ Q K D IK DVV YT VL G++  G++   +
Sbjct: 257  FCPGVMDYTNMIRFLVKEGRGMDALDILNQQKQDGIKLDVVSYTMVLSGIVAEGEYVMLD 316

Query: 542  EVFDEMLVLGIVPDVHTYNVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSMYNTLMGAL 721
            E+FDEMLV+G++PD +TYNVY+ GLC QN+     ++VA MEELGCKP+V  YNTL+GAL
Sbjct: 317  ELFDEMLVIGLIPDAYTYNVYINGLCKQNNVAEALQIVASMEELGCKPNVVTYNTLLGAL 376

Query: 722  CKVGKVMRAKEVLTKMRLKGLQGNLHSYSILINGSMCEGEVGEACEFWEDMLTRGFVPMS 901
               G  ++A+E++ +M  KG+  NLH+Y I+++G + +GE+GE+C   E+ML +   P S
Sbjct: 377  SVAGDFVKARELMKEMGWKGVGLNLHTYRIVLDGLVGKGEIGESCLLLEEMLEKCLFPRS 436

Query: 902  LTCDEMICGLCKLGLNSEALRILKQMVEMNIMPGVSAWEALL 1027
             T D +I  +C+  L +EA+ + K++V  + +PG S WEALL
Sbjct: 437  STFDNIIFQMCQKDLFTEAMELTKKVVAKSFLPGASTWEALL 478


>ref|XP_002533822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223526239|gb|EEF28557.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 373

 Score =  331 bits (849), Expect = 2e-88
 Identities = 161/357 (45%), Positives = 236/357 (66%)
 Frame = +2

Query: 2    AVDMFFKIPSFRCNPXXXXXXXXXXXXCKRKEGIGLVHQVLLKSRGMNIRLEESTFEILI 181
            A+ +F++ P+FRC P            C+  EG+  V +VLLKS+ MNIR+EES+F +LI
Sbjct: 4    AIHLFYRTPNFRCVPSVYLLNTLLSVLCRTNEGLNFVPEVLLKSQDMNIRMEESSFRLLI 63

Query: 182  TALCKLKKIGYAIEILDSMSEYGYDPDSTLYSCILSAMCKLRDVSTVEVWGFLEEMRAKG 361
             ALC + K+GYA+E+ + M   G+  DS + S +LS++C   D+S+ EV  FL E+R  G
Sbjct: 64   NALCSINKVGYAVEMFNCMINDGFSVDSKICSLLLSSLCYQADISSSEVMRFLGELRKFG 123

Query: 362  FTPNEVDYANVVSFLVKVGKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAE 541
            F P   DY+ V++FLV+ G GM+AL+++ QMKLD IKPD+V YT VL+GVI  G + KA+
Sbjct: 124  FCPGIKDYSKVINFLVRRGMGMEALNVLNQMKLDGIKPDIVCYTTVLNGVIANGVYSKAD 183

Query: 542  EVFDEMLVLGIVPDVHTYNVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSMYNTLMGAL 721
            E+FDE+LV G+VPDV+TYNVY+ GLC QN+ EAG ++V  MEELGCKP++  YN L+  L
Sbjct: 184  ELFDELLVFGLVPDVYTYNVYIYGLCKQNNVEAGIEMVTSMEELGCKPNLITYNILLEDL 243

Query: 722  CKVGKVMRAKEVLTKMRLKGLQGNLHSYSILINGSMCEGEVGEACEFWEDMLTRGFVPMS 901
            CK G+  RA++++  M  KG+   + +Y ++I+G    G++ +AC   E+ L +G  P  
Sbjct: 244  CKNGEDSRARDLVRDMGSKGIGLGMQTYKVMIHGLTSGGKIVKACSLLEEALDKGLCPRG 303

Query: 902  LTCDEMICGLCKLGLNSEALRILKQMVEMNIMPGVSAWEALLSIRQLRLNDTVSLDL 1072
            L  DE+I GLC+ G   +AL +L+++V  N+ PGV  WE LL    +   +   +DL
Sbjct: 304  LRFDEVIYGLCQTGSICKALELLEKVVNKNVSPGVRVWETLLLKSNINFVEDTFIDL 360