BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020438
         (783 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAA33036.1| ribulose 1,5-bisphosphate carboxylase/oxygenase s...   287   2e-75
sp|Q04450.1|RBS2_MESCR RecName: Full=Ribulose bisphosphate carbo...   285   8e-75
sp|P16032.2|RBS1_MESCR RecName: Full=Ribulose bisphosphate carbo...   280   3e-73
dbj|BAI53120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   280   3e-73
gb|AAA33037.1| ribulose 1,5-bisphosphate carboxylase/oxygenase s...   279   4e-73

>gb|AAA33036.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
           [Mesembryanthemum crystallinum]
          Length = 180

 Score =  287 bits (734), Expect = 2e-75
 Identities = 134/166 (80%), Positives = 147/166 (88%), Gaps = 1/166 (0%)
 Frame = +2

Query: 179 RATPAQASMVTPFTGLKSTSAFPVTRKVNDITSISSNGGKVSCMQVWNPVKNQKFETLSY 358
           R TPAQASMV PFTGLKS SAFPVT+K NDITSI+SNGG+V CMQVW P+  +KFETLSY
Sbjct: 13  RTTPAQASMVAPFTGLKSVSAFPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSY 72

Query: 359 LPPLSAEALAKEIEYLLKNNWIPCLEFD-LKGFVFREHGNTPGYYDGRYWTMWKLPMFGC 535
           LPPLS E+L KE++YLL N W+PCLEF+   GFV+REHGNTPGYYDGRYWTMWKLPMFGC
Sbjct: 73  LPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGC 132

Query: 536 TDASQVLAELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAYKPENY 673
           TD SQV+AELEEAKKAYP AFIRIIGFDN RQVQCISFIAYKP +Y
Sbjct: 133 TDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPASY 178


>sp|Q04450.1|RBS2_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 2,
           chloroplastic; Short=RuBisCO small subunit 2; Flags:
           Precursor gi|304444|gb|AAA03694.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Mesembryanthemum crystallinum]
          Length = 180

 Score =  285 bits (729), Expect = 8e-75
 Identities = 133/166 (80%), Positives = 146/166 (87%), Gaps = 1/166 (0%)
 Frame = +2

Query: 179 RATPAQASMVTPFTGLKSTSAFPVTRKVNDITSISSNGGKVSCMQVWNPVKNQKFETLSY 358
           R TPAQASMV PFTGLKS SAFPVT+K NDITSI+SNGG+V CMQVW P+  +KFETLSY
Sbjct: 13  RTTPAQASMVAPFTGLKSVSAFPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSY 72

Query: 359 LPPLSAEALAKEIEYLLKNNWIPCLEFD-LKGFVFREHGNTPGYYDGRYWTMWKLPMFGC 535
           LPPLS E+L KE++YLL N W+PCLEF+   GFV+REHGNTPGYYDGRYWTMWKLPMFGC
Sbjct: 73  LPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGC 132

Query: 536 TDASQVLAELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAYKPENY 673
           TD SQV+AELEEAKKAYP AF RIIGFDN RQVQCISFIAYKP +Y
Sbjct: 133 TDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKPASY 178


>sp|P16032.2|RBS1_MESCR RecName: Full=Ribulose bisphosphate carboxylase small chain 1,
           chloroplastic; Short=RuBisCO small subunit 1; Flags:
           Precursor gi|304442|gb|AAA03693.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Mesembryanthemum crystallinum]
           gi|228311|prf||1802403A RuBisCO:SUBUNIT=small
          Length = 182

 Score =  280 bits (716), Expect = 3e-73
 Identities = 129/164 (78%), Positives = 145/164 (88%), Gaps = 1/164 (0%)
 Frame = +2

Query: 185 TPAQASMVTPFTGLKSTSAFPVTRKVNDITSISSNGGKVSCMQVWNPVKNQKFETLSYLP 364
           TPAQASMV PF GLKS +AFPVT+K NDITS+++NGG+V CMQVW P+  +KFETLSYLP
Sbjct: 17  TPAQASMVAPFNGLKSVAAFPVTKKNNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLP 76

Query: 365 PLSAEALAKEIEYLLKNNWIPCLEFD-LKGFVFREHGNTPGYYDGRYWTMWKLPMFGCTD 541
           PLS E+L KE++YLL N W+PCLEF+   GFV+REHGNTPGYYDGRYWTMWKLPMFGCTD
Sbjct: 77  PLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTD 136

Query: 542 ASQVLAELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAYKPENY 673
            SQV+AELEEAKKAYP AFIRIIGFDN RQVQCISFIAYKP +Y
Sbjct: 137 PSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPASY 180


>dbj|BAI53120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Eucalyptus globulus]
          Length = 179

 Score =  280 bits (715), Expect = 3e-73
 Identities = 131/167 (78%), Positives = 151/167 (90%), Gaps = 2/167 (1%)
 Frame = +2

Query: 179 RATPAQASMVTPFTGLKSTSAFPVTRKVN-DITSISSNGGKVSCMQVWNPVKNQKFETLS 355
           RATPAQA+MV PFTGLKS SAFPVTRK + DITS+SSNGG+V CMQVW P+  +KFETLS
Sbjct: 13  RATPAQATMVAPFTGLKSASAFPVTRKSSEDITSLSSNGGRVQCMQVWPPIGKKKFETLS 72

Query: 356 YLPPLSAEALAKEIEYLLKNNWIPCLEFDLK-GFVFREHGNTPGYYDGRYWTMWKLPMFG 532
           YLPPLS E+LAKE++YLL++ W+PCLEF+L+ GFV+REH ++PGYYDGRYWTMWKLPMFG
Sbjct: 73  YLPPLSPESLAKEVDYLLRSGWVPCLEFELEHGFVYREHHSSPGYYDGRYWTMWKLPMFG 132

Query: 533 CTDASQVLAELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAYKPENY 673
           CTD++QVL ELEEAKKAYP AFIRIIGFDNKRQVQCISFIAYKP  +
Sbjct: 133 CTDSAQVLKELEEAKKAYPTAFIRIIGFDNKRQVQCISFIAYKPPGF 179


>gb|AAA33037.1| ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
           [Mesembryanthemum crystallinum]
          Length = 183

 Score =  279 bits (714), Expect = 4e-73
 Identities = 130/164 (79%), Positives = 144/164 (87%), Gaps = 1/164 (0%)
 Frame = +2

Query: 185 TPAQASMVTPFTGLKSTSAFPVTRKVNDITSISSNGGKVSCMQVWNPVKNQKFETLSYLP 364
           T AQA+MV PF GLKS SAFPVTRK NDITS++SNGG+V CMQVW P+  +KFETLSYLP
Sbjct: 18  TTAQANMVAPFNGLKSVSAFPVTRKNNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLP 77

Query: 365 PLSAEALAKEIEYLLKNNWIPCLEFD-LKGFVFREHGNTPGYYDGRYWTMWKLPMFGCTD 541
           PLS E+L KE++YLL N W+PCLEF+   GFV+REHGNTPGYYDGRYWTMWKLPMFGCTD
Sbjct: 78  PLSEESLIKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTD 137

Query: 542 ASQVLAELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAYKPENY 673
            SQV+AELEEAKKAYP AFIRIIGFDN RQVQCISFIAYKP +Y
Sbjct: 138 PSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPASY 181