BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020412
         (926 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   181   1e-61
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   165   9e-57
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   166   1e-51
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   154   2e-51
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   159   7e-51

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  181 bits (458), Expect(2) = 1e-61
 Identities = 84/168 (50%), Positives = 121/168 (72%)
 Frame = -2

Query: 505 IQYMFTHKQLPGGINSTLLCLIPKVKNTSYVKDFRPIACCNIIHKCVSKVLTNRMKTCIV 326
           IQ  F + ++   IN  ++ L+PKV++ + VK+FRPIACC +I+K +SK+LTNRMK  I 
Sbjct: 481 IQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIG 540

Query: 325 DLISCSQSAFVPGRSIQDNLLLAHELLRGYARKRGQKRCAIKLDIKKAYDSVSWSAFKVI 146
           ++++ +QS F+PGR I DN+LLA EL+RGY RK    RC +K+DI+KAYDSV WS  + +
Sbjct: 541 EVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETL 600

Query: 145 LQKFKFPVLFIDWVYMCYASPSFSVMVNGTLEGYFQGKRGLRQGDPIS 2
           L +F FP  F+ W+  C ++ S+SV+VNG     FQ ++GLRQGDP+S
Sbjct: 601 LYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMS 648



 Score = 82.8 bits (203), Expect(2) = 1e-61
 Identities = 47/140 (33%), Positives = 72/140 (51%)
 Frame = -1

Query: 923 LEEADLYQRTDIDWMLFGDKCSKYFFNALKEKKSRNRVWEFIDEQGTRREGKEPVAAAFL 744
           +E++ L Q++ I W+  GD  SK FF A+K + + NR+     E G   +  + V    L
Sbjct: 339 IEDSILQQKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEIL 398

Query: 743 NYYKELLGVPSSAFCDXXXXXXXXXXXXXXETSQILETPISDIEIKEALFGMEDNRTPGP 564
            +YK+LLG  +S                  +  + L   ++  EI EAL G+ +++ PG 
Sbjct: 399 EFYKKLLGTRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGL 458

Query: 563 DGFNACFFKKCWGTIGE*SY 504
           DGFNA FFKK WG+I +  Y
Sbjct: 459 DGFNAYFFKKSWGSIKQEIY 478


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  165 bits (418), Expect(2) = 9e-57
 Identities = 75/164 (45%), Positives = 111/164 (67%)
 Frame = -2

Query: 493 FTHKQLPGGINSTLLCLIPKVKNTSYVKDFRPIACCNIIHKCVSKVLTNRMKTCIVDLIS 314
           F HK     IN T + LIPK+    + KD+RPIACC+ ++K +SK+LT R++  I +++ 
Sbjct: 492 FMHKP----INCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVD 547

Query: 313 CSQSAFVPGRSIQDNLLLAHELLRGYARKRGQKRCAIKLDIKKAYDSVSWSAFKVILQKF 134
           C+Q+ F+P R I DN+LLA EL+RGY R+    RC IK+DI+KAYDSV W   + +L++ 
Sbjct: 548 CAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKEL 607

Query: 133 KFPVLFIDWVYMCYASPSFSVMVNGTLEGYFQGKRGLRQGDPIS 2
            FP +FI W+  C  + S+S+++NG     F  ++GLRQGDP+S
Sbjct: 608 GFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLS 651



 Score = 82.0 bits (201), Expect(2) = 9e-57
 Identities = 45/140 (32%), Positives = 72/140 (51%)
 Frame = -1

Query: 923 LEEADLYQRTDIDWMLFGDKCSKYFFNALKEKKSRNRVWEFIDEQGTRREGKEPVAAAFL 744
           ++E+ L Q++ I W+  GD  SK+FF A+K +K+RN++    +++G +      +     
Sbjct: 342 IDESILKQKSRIQWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEIC 401

Query: 743 NYYKELLGVPSSAFCDXXXXXXXXXXXXXXETSQILETPISDIEIKEALFGMEDNRTPGP 564
           N+Y+ LLG  SS                   +   L  PI+  EI +AL  ++D + PG 
Sbjct: 402 NFYRRLLGTSSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGL 461

Query: 563 DGFNACFFKKCWGTIGE*SY 504
           DGFN+ FFKK W  I +  Y
Sbjct: 462 DGFNSVFFKKSWLVIKQEIY 481


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  166 bits (421), Expect(2) = 1e-51
 Identities = 83/169 (49%), Positives = 110/169 (65%)
 Frame = -2

Query: 508  AIQYMFTHKQLPGGINSTLLCLIPKVKNTSYVKDFRPIACCNIIHKCVSKVLTNRMKTCI 329
            A+Q  FT   LP GINST+L LIPK      +KD+RPI+CCN+++K +SK++ NR+K  +
Sbjct: 495  AVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVL 554

Query: 328  VDLISCSQSAFVPGRSIQDNLLLAHELLRGYARKRGQKRCAIKLDIKKAYDSVSWSAFKV 149
               I+ +QSAFV  R + +NLLLA EL++ Y +     RCAIK+DI KA+DSV W     
Sbjct: 555  PKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLIN 614

Query: 148  ILQKFKFPVLFIDWVYMCYASPSFSVMVNGTLEGYFQGKRGLRQGDPIS 2
            +     FP  FI W+ +C  + SFSV VNG L GYFQ  RGLRQG  +S
Sbjct: 615  VFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALS 663



 Score = 63.5 bits (153), Expect(2) = 1e-51
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 2/139 (1%)
 Frame = -1

Query: 923 LEEADLYQRTDIDWMLFGDKCSKYFFNALKEKKSRNRVWEFIDEQGTRREGKEPVAAAFL 744
           LEE  L Q++ + W   GD+ +K F  A   +++ N + E +   G  +   + + A   
Sbjct: 352 LEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAE 411

Query: 743 NYYKELLGVPSSAF--CDXXXXXXXXXXXXXXETSQILETPISDIEIKEALFGMEDNRTP 570
            +++E L +  + F                     Q L  P++  EI++ LF M  +++P
Sbjct: 412 RFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSP 471

Query: 569 GPDGFNACFFKKCWGTIGE 513
           GPDG+ + FFK  W  IG+
Sbjct: 472 GPDGYTSEFFKATWEIIGD 490


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  154 bits (388), Expect(2) = 2e-51
 Identities = 77/177 (43%), Positives = 115/177 (64%)
 Frame = -2

Query: 532  VGVLLVSKAIQYMFTHKQLPGGINSTLLCLIPKVKNTSYVKDFRPIACCNIIHKCVSKVL 353
            VG  L++ A+Q  F   +L G  NST + ++PK  N   + +FRPI+CCN I+K +SK+L
Sbjct: 481  VGPSLIA-AVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLL 539

Query: 352  TNRMKTCIVDLISCSQSAFVPGRSIQDNLLLAHELLRGYARKRGQKRCAIKLDIKKAYDS 173
              R++  +   IS SQSAFV GR + +N+LLA EL++G+ +     R  +K+D++KA+DS
Sbjct: 540  ARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDS 599

Query: 172  VSWSAFKVILQKFKFPVLFIDWVYMCYASPSFSVMVNGTLEGYFQGKRGLRQGDPIS 2
            V W      L+    P  F++W+  C  S SFS+ V+G+L GYF+G +GLRQGDP+S
Sbjct: 600  VGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLS 656



 Score = 75.5 bits (184), Expect(2) = 2e-51
 Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
 Frame = -1

Query: 920 EEADLYQRTDIDWMLFGDKCSKYFFNALKEKKSRNRVWEFIDEQGTRREGKEPVAAAFLN 741
           EE  L Q++ + W+  GD  + +F   +  +++ N +   +D+ G R E  + +    ++
Sbjct: 346 EERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVD 405

Query: 740 YYKELLGVPSSAFC--DXXXXXXXXXXXXXXETSQILETPISDIEIKEALFGMEDNRTPG 567
           ++KEL G  S                      T Q+LE  +S+ +IK   F +  N++PG
Sbjct: 406 FFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPG 465

Query: 566 PDGFNACFFKKCWGTIG 516
           PDG+ + FFKK W  +G
Sbjct: 466 PDGYTSEFFKKTWSIVG 482


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score =  159 bits (402), Expect(2) = 7e-51
 Identities = 78/172 (45%), Positives = 115/172 (66%)
 Frame = -2

Query: 517 VSKAIQYMFTHKQLPGGINSTLLCLIPKVKNTSYVKDFRPIACCNIIHKCVSKVLTNRMK 338
           V  AI   F    +P  IN T + L+PK  N + VK+FRPIACC++I+K +SK+LT+RM+
Sbjct: 160 VIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQ 219

Query: 337 TCIVDLISCSQSAFVPGRSIQDNLLLAHELLRGYARKRGQKRCAIKLDIKKAYDSVSWSA 158
             +  ++S +QSAFV GR I DN++L+HEL++ Y+RK    RC +K+D++KAY+SV W  
Sbjct: 220 GVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYNSVEWPF 279

Query: 157 FKVILQKFKFPVLFIDWVYMCYASPSFSVMVNGTLEGYFQGKRGLRQGDPIS 2
            K ++ +  F   F++WV  C  + S++  +NG L   F  K+GLRQGDPIS
Sbjct: 280 IKHLMLELGFSYKFVNWVMGCLTTASYTFNINGDLTRPFAAKKGLRQGDPIS 331



 Score = 68.6 bits (166), Expect(2) = 7e-51
 Identities = 36/137 (26%), Positives = 63/137 (45%)
 Frame = -1

Query: 923 LEEADLYQRTDIDWMLFGDKCSKYFFNALKEKKSRNRVWEFIDEQGTRREGKEPVAAAFL 744
           +EE    Q++  +W+  GD  +K+F    KE++ +N +   I E GTR +    +     
Sbjct: 22  IEEKIWMQKSRANWIQLGDSNTKFFHAYAKERRCQNNIKFLITEDGTRIDKHNLIKEEIR 81

Query: 743 NYYKELLGVPSSAFCDXXXXXXXXXXXXXXETSQILETPISDIEIKEALFGMEDNRTPGP 564
            +Y +L+G    +                     +L +  + +E+K  LF M+ ++ PG 
Sbjct: 82  GFYLKLMGSSVDSLPMVDKNVVKRGPMLSQHQQDLLCSKFTAVEVKNVLFSMDSSKAPGI 141

Query: 563 DGFNACFFKKCWGTIGE 513
           DG+N  FFK  W  IG+
Sbjct: 142 DGYNVHFFKCSWNIIGD 158