BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020378
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280236.2| PREDICTED: 5'-3' exoribonuclease 3-like [Vit...   102   4e-20
emb|CBI19841.3| unnamed protein product [Vitis vinifera]              102   4e-20
ref|XP_002306919.1| predicted protein [Populus trichocarpa] gi|2...   100   9e-20
gb|AAF87130.1|AC006434_26 F10A5.15 [Arabidopsis thaliana]             100   2e-19
ref|NP_565114.1| 5'-3' exoribonuclease 3 [Arabidopsis thaliana] ...   100   2e-19

>ref|XP_002280236.2| PREDICTED: 5'-3' exoribonuclease 3-like [Vitis vinifera]
          Length = 1065

 Score =  102 bits (253), Expect = 4e-20
 Identities = 46/63 (73%), Positives = 48/63 (76%)
 Frame = +1

Query: 118 MGVPAFYRWLAEKYPMXXXXXXXXXXXXXXGTSIPVDTSKPNPNNLEYDNLYLDMNGIIH 297
           MGVPAFYRWLAEKYP+              G SIPVDTSKPNPNN+EYDNLYLDMNGIIH
Sbjct: 1   MGVPAFYRWLAEKYPLVVVDVIEEEPVEIDGISIPVDTSKPNPNNIEYDNLYLDMNGIIH 60

Query: 298 PCF 306
           PCF
Sbjct: 61  PCF 63


>emb|CBI19841.3| unnamed protein product [Vitis vinifera]
          Length = 870

 Score =  102 bits (253), Expect = 4e-20
 Identities = 46/63 (73%), Positives = 48/63 (76%)
 Frame = +1

Query: 118 MGVPAFYRWLAEKYPMXXXXXXXXXXXXXXGTSIPVDTSKPNPNNLEYDNLYLDMNGIIH 297
           MGVPAFYRWLAEKYP+              G SIPVDTSKPNPNN+EYDNLYLDMNGIIH
Sbjct: 1   MGVPAFYRWLAEKYPLVVVDVIEEEPVEIDGISIPVDTSKPNPNNIEYDNLYLDMNGIIH 60

Query: 298 PCF 306
           PCF
Sbjct: 61  PCF 63


>ref|XP_002306919.1| predicted protein [Populus trichocarpa] gi|222856368|gb|EEE93915.1|
           predicted protein [Populus trichocarpa]
          Length = 998

 Score =  100 bits (250), Expect = 9e-20
 Identities = 45/63 (71%), Positives = 47/63 (74%)
 Frame = +1

Query: 118 MGVPAFYRWLAEKYPMXXXXXXXXXXXXXXGTSIPVDTSKPNPNNLEYDNLYLDMNGIIH 297
           MGVPAFYRWLAEKYP+              G  IPVDTSKPNPNN+EYDNLYLDMNGIIH
Sbjct: 1   MGVPAFYRWLAEKYPLVVVDVIEEEPVVIEGVKIPVDTSKPNPNNIEYDNLYLDMNGIIH 60

Query: 298 PCF 306
           PCF
Sbjct: 61  PCF 63


>gb|AAF87130.1|AC006434_26 F10A5.15 [Arabidopsis thaliana]
          Length = 1037

 Score =  100 bits (248), Expect = 2e-19
 Identities = 45/63 (71%), Positives = 47/63 (74%)
 Frame = +1

Query: 118 MGVPAFYRWLAEKYPMXXXXXXXXXXXXXXGTSIPVDTSKPNPNNLEYDNLYLDMNGIIH 297
           MGVP+FYRWLAEKYP+              G  IPVDTSKPNPNNLEYDNLYLDMNGIIH
Sbjct: 1   MGVPSFYRWLAEKYPLLVADVIEEEPVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIH 60

Query: 298 PCF 306
           PCF
Sbjct: 61  PCF 63


>ref|NP_565114.1| 5'-3' exoribonuclease 3 [Arabidopsis thaliana]
           gi|75262832|sp|Q9FQ03.1|XRN3_ARATH RecName: Full=5'-3'
           exoribonuclease 3; AltName: Full=Protein EXORIBONUCLEASE
           3 gi|11875628|gb|AAG40732.1|AF286719_1 XRN3 [Arabidopsis
           thaliana] gi|332197621|gb|AEE35742.1| 5'-3'
           exoribonuclease 3 [Arabidopsis thaliana]
          Length = 1020

 Score =  100 bits (248), Expect = 2e-19
 Identities = 45/63 (71%), Positives = 47/63 (74%)
 Frame = +1

Query: 118 MGVPAFYRWLAEKYPMXXXXXXXXXXXXXXGTSIPVDTSKPNPNNLEYDNLYLDMNGIIH 297
           MGVP+FYRWLAEKYP+              G  IPVDTSKPNPNNLEYDNLYLDMNGIIH
Sbjct: 1   MGVPSFYRWLAEKYPLLVADVIEEEPVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIH 60

Query: 298 PCF 306
           PCF
Sbjct: 61  PCF 63