BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020346
         (1015 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containi...   249   1e-63
emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]   245   1e-62
ref|XP_002262853.2| PREDICTED: pentatricopeptide repeat-containi...   240   5e-61
ref|XP_002517926.1| pentatricopeptide repeat-containing protein,...   238   2e-60
gb|AFK47046.1| unknown [Lotus japonicus]                              231   2e-58

>ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial [Vitis vinifera]
          Length = 499

 Score =  249 bits (635), Expect = 1e-63
 Identities = 117/234 (50%), Positives = 164/234 (70%)
 Frame = +3

Query: 3   SNIDGMEKILQSMEVNPKIIMDWNSYAIAANGYIKVGRIDKALQTLKNSEKLITGKQRRV 182
           S+++GMEK+L  +E +P +  DWN+Y +AANGY+K    +KA++ LK SE+ I+G+ RR 
Sbjct: 219 SDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFISGRSRRF 278

Query: 183 AYDFLLTMYAGARSKEDLYRIWKLYKSSEKLNNTSFLCMIRSLLKLDDIAGAEKILEEWG 362
            Y+ LLT+YA   +K ++YRIW LYK+  K  NT ++ M+ SLLKLDD+ GAEK  EEW 
Sbjct: 279 GYEILLTLYATMGNKTEVYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGAEKTFEEWL 338

Query: 363 SGHTSYDFRVPNLVIAAYCKNGLVEKAEMFLNKTVEKGKKPLSSSWDHLATGYVAANQFP 542
           SG+  +DFRVPNL+I AYCK GL+EKAE  +++ +E+G++P++ +WD LA GY   NQ  
Sbjct: 339 SGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGYHENNQME 398

Query: 543 KALKAMESALLARRPKWMPNRDTLSACLEYLKQQGDAEKTEEFVSTWGSQSYVN 704
           KA+  ++ ALLA    W PN  TLSACLEYLK +GD E+ E  +     QS V+
Sbjct: 399 KAVDTLKKALLATSQGWKPNPVTLSACLEYLKGKGDVEEAENLIRLLREQSLVS 452


>emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]
          Length = 499

 Score =  245 bits (626), Expect = 1e-62
 Identities = 116/234 (49%), Positives = 162/234 (69%)
 Frame = +3

Query: 3   SNIDGMEKILQSMEVNPKIIMDWNSYAIAANGYIKVGRIDKALQTLKNSEKLITGKQRRV 182
           S+++GMEK+L  +E +P +  DWN+Y +AANGY+K    +KA++ LK SE+ I+G+ RR 
Sbjct: 219 SDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFISGRSRRF 278

Query: 183 AYDFLLTMYAGARSKEDLYRIWKLYKSSEKLNNTSFLCMIRSLLKLDDIAGAEKILEEWG 362
            Y+ LLT+YA   +K + YRIW LYK+  K  NT ++ M+ SLLKLDD+ GAEK  EEW 
Sbjct: 279 GYEILLTLYATMGNKTEXYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGAEKTFEEWL 338

Query: 363 SGHTSYDFRVPNLVIAAYCKNGLVEKAEMFLNKTVEKGKKPLSSSWDHLATGYVAANQFP 542
           SG+  +DFRVPNL+I AYCK GL+EKAE  +++ +E+G++P++ +WD LA GY   NQ  
Sbjct: 339 SGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGYHENNQME 398

Query: 543 KALKAMESALLARRPKWMPNRDTLSACLEYLKQQGDAEKTEEFVSTWGSQSYVN 704
           KA+  ++ ALLA    W PN  TLSACLEYLK + D E+ E  +     QS V+
Sbjct: 399 KAVDTLKKALLATSQGWKPNPVTLSACLEYLKGKXDVEEAENLIRLLREQSLVS 452


>ref|XP_002262853.2| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score =  240 bits (612), Expect = 5e-61
 Identities = 113/224 (50%), Positives = 155/224 (69%)
 Frame = +3

Query: 3   SNIDGMEKILQSMEVNPKIIMDWNSYAIAANGYIKVGRIDKALQTLKNSEKLITGKQRRV 182
           SNI G++ I+  ME +P+II+DWNSYA+ A+GY+KVG +DK L  +K  E+LI  K   V
Sbjct: 233 SNIVGIDNIVTRMESDPRIILDWNSYAVVAHGYLKVGLVDKTLVMMKKLEELIDAKGSNV 292

Query: 183 AYDFLLTMYAGARSKEDLYRIWKLYKSSEKLNNTSFLCMIRSLLKLDDIAGAEKILEEWG 362
           A+D LL +YA  R +++L R+W LYK  EK+ N  ++ MI SLLK DDI  AEK+LEEW 
Sbjct: 293 AFDNLLKLYAETRQRDELDRVWMLYKKKEKIYNKGYMAMISSLLKFDDIDAAEKVLEEWE 352

Query: 363 SGHTSYDFRVPNLVIAAYCKNGLVEKAEMFLNKTVEKGKKPLSSSWDHLATGYVAANQFP 542
           S   SYDFRVPN +I AYC+ GL EKAE  +NK + KG  PL  +W +LA GY+  +Q P
Sbjct: 353 SRRLSYDFRVPNFLIDAYCRKGLTEKAEALVNKILTKGGNPLVDTWFYLANGYLEDSQIP 412

Query: 543 KALKAMESALLARRPKWMPNRDTLSACLEYLKQQGDAEKTEEFV 674
           KA++A++ A++   P W P+++TL+ CLEYL+   D E   EF+
Sbjct: 413 KAVEALKKAVVVCPPNWKPSKNTLATCLEYLEGNRDVEGAGEFI 456


>ref|XP_002517926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542908|gb|EEF44444.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score =  238 bits (607), Expect = 2e-60
 Identities = 112/224 (50%), Positives = 158/224 (70%)
 Frame = +3

Query: 3   SNIDGMEKILQSMEVNPKIIMDWNSYAIAANGYIKVGRIDKALQTLKNSEKLITGKQRRV 182
           S+I+GMEK+L  MEV+P I + +++Y IAANGY+K G +DK L  LK SE+LI+G  RR 
Sbjct: 224 SDIEGMEKLLMKMEVDPNISVGFHAYVIAANGYLKAGLVDKTLIMLKRSEQLISGNTRRF 283

Query: 183 AYDFLLTMYAGARSKEDLYRIWKLYKSSEKLNNTSFLCMIRSLLKLDDIAGAEKILEEWG 362
           AY+FLLT+Y  + +K ++YRIW  YK   +  N+ ++CMI SLLKLDDI GAE+I EEW 
Sbjct: 284 AYEFLLTLYTASGNKAEVYRIWNKYKEIGRFFNSGYICMISSLLKLDDIDGAERIFEEWD 343

Query: 363 SGHTSYDFRVPNLVIAAYCKNGLVEKAEMFLNKTVEKGKKPLSSSWDHLATGYVAANQFP 542
           S    +D R+PN ++  Y + G +EKAE ++NK V  G++P ++SW+HLA GY ++ Q  
Sbjct: 344 SKKVLFDIRIPNSMVNVYSRKGHLEKAETYINKIVASGEEPDATSWNHLAAGYHSSGQMT 403

Query: 543 KALKAMESALLARRPKWMPNRDTLSACLEYLKQQGDAEKTEEFV 674
           KA++ +  A+   +P W P+  TLSACLE+LK QGDAE  EE +
Sbjct: 404 KAVETIRKAISVSKPGWKPSLLTLSACLEFLKGQGDAETLEELL 447


>gb|AFK47046.1| unknown [Lotus japonicus]
          Length = 496

 Score =  231 bits (590), Expect = 2e-58
 Identities = 106/223 (47%), Positives = 154/223 (69%)
 Frame = +3

Query: 6   NIDGMEKILQSMEVNPKIIMDWNSYAIAANGYIKVGRIDKALQTLKNSEKLITGKQRRVA 185
           +++GMEK+L  ME +P   +DW +Y+ AANGY+K G ++KAL  LK SE+ + GK+ R+A
Sbjct: 219 DVEGMEKLLMQMEADPMATVDWYTYSTAANGYLKAGNVEKALAALKKSEQSVKGKKLRLA 278

Query: 186 YDFLLTMYAGARSKEDLYRIWKLYKSSEKLNNTSFLCMIRSLLKLDDIAGAEKILEEWGS 365
           Y+ L + YA   +K+++YR+W   K+ +   N+S++CM+ SLLKLDD  GAEKIL EW S
Sbjct: 279 YESLQSTYAAIGNKDEVYRLWNRIKNLQNCWNSSYICMLSSLLKLDDFDGAEKILAEWES 338

Query: 366 GHTSYDFRVPNLVIAAYCKNGLVEKAEMFLNKTVEKGKKPLSSSWDHLATGYVAANQFPK 545
            H ++D R+PNL+I AYCK GL++KAE ++ K ++ GKK   SSWD +A GY   N   K
Sbjct: 339 EHKNFDTRIPNLMITAYCKRGLLDKAEAYIQKLLDSGKKLDGSSWDRMAAGYHMDNDMEK 398

Query: 546 ALKAMESALLARRPKWMPNRDTLSACLEYLKQQGDAEKTEEFV 674
           A++ M+ A+LA RP W P+  TL AC+ YLK++ D E   E +
Sbjct: 399 AVQTMKKAILANRPGWRPSPSTLVACITYLKEKLDLESALEIL 441