BLASTX nr result

ID: Coptis21_contig00020322 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020322
         (425 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323571.1| predicted protein [Populus trichocarpa] gi|2...    62   4e-08
ref|XP_002274657.1| PREDICTED: probable LRR receptor-like serine...    60   2e-07
ref|XP_002528112.1| conserved hypothetical protein [Ricinus comm...    57   2e-06

>ref|XP_002323571.1| predicted protein [Populus trichocarpa] gi|222868201|gb|EEF05332.1|
           predicted protein [Populus trichocarpa]
          Length = 385

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 32/61 (52%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
 Frame = -2

Query: 175 MGLWCFGI---FKKNQERSIPNAENIQDITPDNVRVFPYKVLKSATGNFHPSNRLGRGGF 5
           M   CFG    FK N     P   N Q I  DNV +F Y  L+SAT NFHPSNR+G GGF
Sbjct: 1   MSCSCFGRSNWFKGNNHNDTPGQTNAQVIATDNVNLFSYNSLRSATRNFHPSNRIGGGGF 60

Query: 4   G 2
           G
Sbjct: 61  G 61


>ref|XP_002274657.1| PREDICTED: probable LRR receptor-like serine/threonine-protein
           kinase At1g53430 [Vitis vinifera]
           gi|297740219|emb|CBI30401.3| unnamed protein product
           [Vitis vinifera]
          Length = 380

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 28/58 (48%), Positives = 38/58 (65%)
 Frame = -2

Query: 175 MGLWCFGIFKKNQERSIPNAENIQDITPDNVRVFPYKVLKSATGNFHPSNRLGRGGFG 2
           MGL CFG F+  + +        ++I  +NVR+F Y  L+SAT NFHPS+R+G GGFG
Sbjct: 1   MGLNCFGAFEWCKGKKSLREPEAEEIATNNVRLFSYNSLRSATNNFHPSSRVGGGGFG 58


>ref|XP_002528112.1| conserved hypothetical protein [Ricinus communis]
           gi|223532501|gb|EEF34291.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 318

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 24/54 (44%), Positives = 36/54 (66%)
 Frame = -2

Query: 163 CFGIFKKNQERSIPNAENIQDITPDNVRVFPYKVLKSATGNFHPSNRLGRGGFG 2
           CF +    + ++  + +  ++I  +NVRVF Y  L+SAT +FHPSNR+G GGFG
Sbjct: 5   CFNLLNSCKRKNRHSQQQTEEIVTNNVRVFSYNSLRSATKDFHPSNRIGGGGFG 58


Top