BLASTX nr result
ID: Coptis21_contig00020308
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00020308
(626 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containi... 257 1e-66
emb|CBI37948.3| unnamed protein product [Vitis vinifera] 257 1e-66
ref|XP_002534048.1| pentatricopeptide repeat-containing protein,... 256 3e-66
ref|XP_004158415.1| PREDICTED: pentatricopeptide repeat-containi... 243 2e-62
ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containi... 243 2e-62
>ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Vitis vinifera]
Length = 1115
Score = 257 bits (656), Expect = 1e-66
Identities = 131/211 (62%), Positives = 159/211 (75%), Gaps = 3/211 (1%)
Frame = +1
Query: 1 QMALAQSKDGSSSKTEE---GWELPRDTGKEIAAQNNQSGWHESPPLKGRHANIQDNEPK 171
+M+L+ K+GSS K + G PRD + ++ + P G + ++ +
Sbjct: 368 KMSLSCYKEGSSGKRNDLVKGKGFPRDKNGRLPPLSDHRNLSQFPLSNGMTVKEKYHDSE 427
Query: 172 YLSNYNHLLRAGRLSDCIELLKSMDRKGLLDMDKIYHVKFFNICKSQKAVKEAFCFAELI 351
S YN LL GRLSDCI+LL+ M++ GLLDMDK+YH KFF IC+SQKAV EAF FA+LI
Sbjct: 428 KFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKFFKICRSQKAVTEAFRFAKLI 487
Query: 352 GNPTLSTFNMLLSVCASSQDSEGAFQVLRMVKEAGLKADCKLYTTLISSCAKSGKVDTMF 531
PTLSTFNML+SVCA+SQDS GAFQVL++V+EAGLKADCKLYTTLIS+CAKSGKVD MF
Sbjct: 488 PTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAMF 547
Query: 532 KVFHEMVNAGVEPNLHTYGALIDGCARAGQV 624
+VFHEMVNA VEPN+HTYGALIDGC RAGQV
Sbjct: 548 EVFHEMVNAEVEPNVHTYGALIDGCGRAGQV 578
>emb|CBI37948.3| unnamed protein product [Vitis vinifera]
Length = 1550
Score = 257 bits (656), Expect = 1e-66
Identities = 131/211 (62%), Positives = 159/211 (75%), Gaps = 3/211 (1%)
Frame = +1
Query: 1 QMALAQSKDGSSSKTEE---GWELPRDTGKEIAAQNNQSGWHESPPLKGRHANIQDNEPK 171
+M+L+ K+GSS K + G PRD + ++ + P G + ++ +
Sbjct: 803 KMSLSCYKEGSSGKRNDLVKGKGFPRDKNGRLPPLSDHRNLSQFPLSNGMTVKEKYHDSE 862
Query: 172 YLSNYNHLLRAGRLSDCIELLKSMDRKGLLDMDKIYHVKFFNICKSQKAVKEAFCFAELI 351
S YN LL GRLSDCI+LL+ M++ GLLDMDK+YH KFF IC+SQKAV EAF FA+LI
Sbjct: 863 KFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKFFKICRSQKAVTEAFRFAKLI 922
Query: 352 GNPTLSTFNMLLSVCASSQDSEGAFQVLRMVKEAGLKADCKLYTTLISSCAKSGKVDTMF 531
PTLSTFNML+SVCA+SQDS GAFQVL++V+EAGLKADCKLYTTLIS+CAKSGKVD MF
Sbjct: 923 PTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAMF 982
Query: 532 KVFHEMVNAGVEPNLHTYGALIDGCARAGQV 624
+VFHEMVNA VEPN+HTYGALIDGC RAGQV
Sbjct: 983 EVFHEMVNAEVEPNVHTYGALIDGCGRAGQV 1013
>ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223525928|gb|EEF28334.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1129
Score = 256 bits (653), Expect = 3e-66
Identities = 127/208 (61%), Positives = 161/208 (77%), Gaps = 3/208 (1%)
Frame = +1
Query: 10 LAQSKDGSSSKTEE---GWELPRDTGKEIAAQNNQSGWHESPPLKGRHANIQDNEPKYLS 180
LA+ + G+S K E PR+ K Q+ + E P G H+ +D++ + +
Sbjct: 385 LARYERGASRKNEHIGGRRGFPREKEKGHVIQDEHTNLPEFPYPNGVHSTNKDHKAEQVH 444
Query: 181 NYNHLLRAGRLSDCIELLKSMDRKGLLDMDKIYHVKFFNICKSQKAVKEAFCFAELIGNP 360
YN LLR GRL++C++LL+ M+R+GLLDM KIYH KFF ICK QKAVKEAF F +L+ NP
Sbjct: 445 GYNRLLRDGRLAECVDLLEDMERRGLLDMSKIYHAKFFKICKIQKAVKEAFRFCKLVPNP 504
Query: 361 TLSTFNMLLSVCASSQDSEGAFQVLRMVKEAGLKADCKLYTTLISSCAKSGKVDTMFKVF 540
+LSTFNML+SVC+SSQDS+GAF+VLR+ + AGLKADCKLYTTLIS+CAKSGKVD MF+VF
Sbjct: 505 SLSTFNMLMSVCSSSQDSDGAFEVLRLAQGAGLKADCKLYTTLISTCAKSGKVDAMFEVF 564
Query: 541 HEMVNAGVEPNLHTYGALIDGCARAGQV 624
HEMVNAGVEPN+HTYG+LIDGCA+AGQ+
Sbjct: 565 HEMVNAGVEPNVHTYGSLIDGCAKAGQM 592
>ref|XP_004158415.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Cucumis sativus]
Length = 542
Score = 243 bits (620), Expect = 2e-62
Identities = 122/203 (60%), Positives = 154/203 (75%), Gaps = 2/203 (0%)
Frame = +1
Query: 22 KDGSSS--KTEEGWELPRDTGKEIAAQNNQSGWHESPPLKGRHANIQDNEPKYLSNYNHL 195
K+GSS K G + R ++ + + + P G+H + ++ + +YN
Sbjct: 326 KEGSSGNRKKSGGNNISRHGERKEPSLHKGKVVNGLPHPNGKHVHYKNLDVDQYKSYNQC 385
Query: 196 LRAGRLSDCIELLKSMDRKGLLDMDKIYHVKFFNICKSQKAVKEAFCFAELIGNPTLSTF 375
L+ GRL DCI +L+ M+++G+LDM+KIYH KFFNICKS+KAV+EAF + LI NPTLSTF
Sbjct: 386 LKGGRLHDCIRILQDMEKEGILDMNKIYHGKFFNICKSKKAVQEAFQYTALIQNPTLSTF 445
Query: 376 NMLLSVCASSQDSEGAFQVLRMVKEAGLKADCKLYTTLISSCAKSGKVDTMFKVFHEMVN 555
NML+SVCASSQDSE AFQV+R+V+EAG+KADCKLYTTLIS+C KSGKVD MF+VFH MVN
Sbjct: 446 NMLMSVCASSQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVN 505
Query: 556 AGVEPNLHTYGALIDGCARAGQV 624
AGVEPN+HTYGALIDGCARA QV
Sbjct: 506 AGVEPNVHTYGALIDGCARAAQV 528
>ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Cucumis sativus]
Length = 1108
Score = 243 bits (620), Expect = 2e-62
Identities = 122/203 (60%), Positives = 154/203 (75%), Gaps = 2/203 (0%)
Frame = +1
Query: 22 KDGSSS--KTEEGWELPRDTGKEIAAQNNQSGWHESPPLKGRHANIQDNEPKYLSNYNHL 195
K+GSS K G + R ++ + + + P G+H + ++ + +YN
Sbjct: 369 KEGSSGNRKKSGGNNISRHGERKEPSLHKGKVVNGLPHPNGKHVHYKNLDVDQYKSYNQC 428
Query: 196 LRAGRLSDCIELLKSMDRKGLLDMDKIYHVKFFNICKSQKAVKEAFCFAELIGNPTLSTF 375
L+ GRL DCI +L+ M+++G+LDM+KIYH KFFNICKS+KAV+EAF + LI NPTLSTF
Sbjct: 429 LKGGRLHDCIRILQDMEKEGILDMNKIYHGKFFNICKSKKAVQEAFQYTALIQNPTLSTF 488
Query: 376 NMLLSVCASSQDSEGAFQVLRMVKEAGLKADCKLYTTLISSCAKSGKVDTMFKVFHEMVN 555
NML+SVCASSQDSE AFQV+R+V+EAG+KADCKLYTTLIS+C KSGKVD MF+VFH MVN
Sbjct: 489 NMLMSVCASSQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVN 548
Query: 556 AGVEPNLHTYGALIDGCARAGQV 624
AGVEPN+HTYGALIDGCARA QV
Sbjct: 549 AGVEPNVHTYGALIDGCARAAQV 571