BLASTX nr result
ID: Coptis21_contig00020287
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00020287
(491 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002608410.1| orf145 [Vitis vinifera] gi|209954207|emb|CAQ... 122 2e-41
emb|CBI14783.3| unnamed protein product [Vitis vinifera] 122 2e-41
ref|YP_005090393.1| orf192 (mitochondrion) [Phoenix dactylifera]... 167 8e-40
ref|YP_173434.1| hypothetical protein NitaMp095 [Nicotiana tabac... 126 1e-39
ref|YP_004222269.1| hypothetical protein BevumaM_p030 [Beta vulg... 126 3e-39
>ref|YP_002608410.1| orf145 [Vitis vinifera] gi|209954207|emb|CAQ77680.1| orf145 [Vitis
vinifera] gi|239764742|gb|ACS15213.1| ORF145 [Vitis
vinifera]
Length = 144
Score = 122 bits (307), Expect(2) = 2e-41
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +2
Query: 242 RGNMYVVTLPAFQRCLEDGPDAAERRPGSGFPTGRGTGDGHLKAHHDLQATPARPGKATR 421
+G++YVVTLPAFQRCLEDGPDAAERRPGSGFPTGRGTGDGHL+AHHDLQA PARPGKATR
Sbjct: 65 KGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGRGTGDGHLEAHHDLQARPARPGKATR 124
Score = 71.2 bits (173), Expect(2) = 2e-41
Identities = 36/54 (66%), Positives = 39/54 (72%)
Frame = +3
Query: 78 LGSGEGKHSMSQERGEGEIPYCERDASRAGLLEMRPFGKAKSI*GHQTLQLMRR 239
LG G + + PYCERDASRAGLLEMRPFG+AKSI GHQTLQLMRR
Sbjct: 7 LGMKRGNIACHKSEARCLTPYCERDASRAGLLEMRPFGEAKSISGHQTLQLMRR 60
>emb|CBI14783.3| unnamed protein product [Vitis vinifera]
Length = 131
Score = 122 bits (307), Expect(2) = 2e-41
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +2
Query: 242 RGNMYVVTLPAFQRCLEDGPDAAERRPGSGFPTGRGTGDGHLKAHHDLQATPARPGKATR 421
+G++YVVTLPAFQRCLEDGPDAAERRPGSGFPTGRGTGDGHL+AHHDLQA PARPGKATR
Sbjct: 65 KGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGRGTGDGHLEAHHDLQARPARPGKATR 124
Score = 71.2 bits (173), Expect(2) = 2e-41
Identities = 36/54 (66%), Positives = 39/54 (72%)
Frame = +3
Query: 78 LGSGEGKHSMSQERGEGEIPYCERDASRAGLLEMRPFGKAKSI*GHQTLQLMRR 239
LG G + + PYCERDASRAGLLEMRPFG+AKSI GHQTLQLMRR
Sbjct: 7 LGMKRGNIACHKSEARCLTPYCERDASRAGLLEMRPFGEAKSISGHQTLQLMRR 60
>ref|YP_005090393.1| orf192 (mitochondrion) [Phoenix dactylifera]
gi|343478445|gb|AEM43933.1| orf192 (mitochondrion)
[Phoenix dactylifera]
Length = 191
Score = 167 bits (423), Expect = 8e-40
Identities = 76/84 (90%), Positives = 79/84 (94%)
Frame = +2
Query: 170 FRDEAFWQSQVNLGPPNPATDEKDRGNMYVVTLPAFQRCLEDGPDAAERRPGSGFPTGRG 349
F DEAFW+SQVN GPPNPATDEKDRG +YVVTLPAFQRCLEDGPDAAERRPGSGFPT RG
Sbjct: 37 FGDEAFWRSQVNFGPPNPATDEKDRGRVYVVTLPAFQRCLEDGPDAAERRPGSGFPTSRG 96
Query: 350 TGDGHLKAHHDLQATPARPGKATR 421
TGDGHL+AHHDLQA PARPGKATR
Sbjct: 97 TGDGHLEAHHDLQARPARPGKATR 120
Score = 94.7 bits (234), Expect = 7e-18
Identities = 70/161 (43%), Positives = 76/161 (47%), Gaps = 19/161 (11%)
Frame = +1
Query: 61 MGLTLYLGVERGNIACHKSEARGRFPTARGTPREPGF*R*GLLAKPSQFRATKPCN**EG 240
MGLTL LG+E+GNIACHKSEARGRFPTARGTPREPGF F P +
Sbjct: 1 MGLTLDLGMEKGNIACHKSEARGRFPTARGTPREPGFGDEAFWRSQVNFGPPNPATDEKD 60
Query: 241 PGKHVRCHTP----CLPKVPXXXXXXXXXXXXXXIPHRQGDRRRPSQG--ASRPTGN--- 393
G+ P CL P RRP G SR TG+
Sbjct: 61 RGRVYVVTLPAFQRCLEDGP------------------DAAERRPGSGFPTSRGTGDGHL 102
Query: 394 -TGETWEGNP---------GVRGSIVPAASRTLYSSFLKVG 486
+ P GVRGSIVPAASRT YSSFLK G
Sbjct: 103 EAHHDLQARPARPGKATRLGVRGSIVPAASRTSYSSFLKAG 143
>ref|YP_173434.1| hypothetical protein NitaMp095 [Nicotiana tabacum]
gi|56806598|dbj|BAD83499.1| hypothetical protein
(mitochondrion) [Nicotiana tabacum]
Length = 147
Score = 126 bits (317), Expect(3) = 1e-39
Identities = 57/60 (95%), Positives = 60/60 (100%)
Frame = +2
Query: 242 RGNMYVVTLPAFQRCLEDGPDAAERRPGSGFPTGRGTGDGHLKAHHDLQATPARPGKATR 421
+G++YVVTLPAFQRCLEDGPDAAERRPGSGFPTGRGTGDGHLKAHHDLQATPARPGKATR
Sbjct: 26 KGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGRGTGDGHLKAHHDLQATPARPGKATR 85
Score = 41.2 bits (95), Expect(3) = 1e-39
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +3
Query: 177 MRPFGKAKSI*GHQTLQLMRR 239
MRPFG+AKSI GHQTLQLMRR
Sbjct: 1 MRPFGEAKSISGHQTLQLMRR 21
Score = 40.8 bits (94), Expect(3) = 1e-39
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +1
Query: 421 GVRGSIVPAASRTLYSSFLKVGG 489
GVRGSIVPAASRT YSSFLK G
Sbjct: 87 GVRGSIVPAASRTSYSSFLKARG 109
>ref|YP_004222269.1| hypothetical protein BevumaM_p030 [Beta vulgaris subsp. maritima]
gi|346683144|ref|YP_004842076.1| hypothetical protein
BemaM_p028 [Beta macrocarpa] gi|54606739|dbj|BAD66762.1|
orf122b [Beta vulgaris subsp. vulgaris]
gi|54606774|dbj|BAD66797.1| orf122b [Beta vulgaris
subsp. vulgaris] gi|317905704|emb|CBJ14093.1|
hypothetical protein [Beta vulgaris subsp. maritima]
gi|319439784|emb|CBJ17502.1| hypothetical protein [Beta
vulgaris subsp. maritima] gi|320148095|emb|CBJ20756.1|
hypothetical protein [Beta vulgaris subsp. maritima]
gi|345500062|emb|CBX24878.1| hypothetical protein [Beta
macrocarpa] gi|384939207|emb|CBL52053.1| hypothetical
protein (mitochondrion) [Beta vulgaris subsp. maritima]
Length = 122
Score = 126 bits (317), Expect(3) = 3e-39
Identities = 57/60 (95%), Positives = 60/60 (100%)
Frame = +2
Query: 242 RGNMYVVTLPAFQRCLEDGPDAAERRPGSGFPTGRGTGDGHLKAHHDLQATPARPGKATR 421
+G++YVVTLPAFQRCLEDGPDAAERRPGSGFPTGRGTGDGHLKAHHDLQATPARPGKATR
Sbjct: 26 KGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGRGTGDGHLKAHHDLQATPARPGKATR 85
Score = 41.2 bits (95), Expect(3) = 3e-39
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +3
Query: 177 MRPFGKAKSI*GHQTLQLMRR 239
MRPFG+AKSI GHQTLQLMRR
Sbjct: 1 MRPFGEAKSISGHQTLQLMRR 21
Score = 40.0 bits (92), Expect(3) = 3e-39
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +1
Query: 421 GVRGSIVPAASRTLYSSFLKVGG 489
GVRGSIVPAA +T YSSFLK GG
Sbjct: 87 GVRGSIVPAAFQTSYSSFLKAGG 109