BLASTX nr result

ID: Coptis21_contig00020272 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020272
         (257 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308721.1| predicted protein [Populus trichocarpa] gi|2...   120   9e-26
ref|XP_004138688.1| PREDICTED: uncharacterized protein At1g32220...   119   3e-25
ref|XP_002324359.1| predicted protein [Populus trichocarpa] gi|2...   115   3e-24
ref|XP_002263819.1| PREDICTED: uncharacterized protein At1g32220...   113   2e-23
gb|AEL98729.1| Rossmann-fold NAD(P)-binding domain-containing pr...   108   5e-22

>ref|XP_002308721.1| predicted protein [Populus trichocarpa] gi|222854697|gb|EEE92244.1|
           predicted protein [Populus trichocarpa]
          Length = 288

 Score =  120 bits (302), Expect = 9e-26
 Identities = 63/87 (72%), Positives = 74/87 (85%), Gaps = 2/87 (2%)
 Frame = -2

Query: 256 SRLIHSHSSSLPKLYAAGLSRNGRLLST--TVVDQAFKVEEAETVNVPPPPSDKLLVLGG 83
           SRLIHS +S L KLY   +S NGR LST    VD+ FKVEEAET+NVPPPP++KLLVLGG
Sbjct: 6   SRLIHSRTS-LSKLYTMAVSSNGRYLSTDSNKVDEPFKVEEAETLNVPPPPTEKLLVLGG 64

Query: 82  NGFVGSNVCKQALDRGLSVASLSRSGR 2
           NGFVGS++CK+A+DRGL+VASLSRSGR
Sbjct: 65  NGFVGSHICKEAVDRGLTVASLSRSGR 91


>ref|XP_004138688.1| PREDICTED: uncharacterized protein At1g32220, chloroplastic-like
           [Cucumis sativus] gi|449493285|ref|XP_004159244.1|
           PREDICTED: uncharacterized protein At1g32220,
           chloroplastic-like [Cucumis sativus]
          Length = 287

 Score =  119 bits (297), Expect = 3e-25
 Identities = 62/87 (71%), Positives = 72/87 (82%), Gaps = 2/87 (2%)
 Frame = -2

Query: 256 SRLIHSHSSSLPKLYAAGLSRNGRLLST--TVVDQAFKVEEAETVNVPPPPSDKLLVLGG 83
           SRLIHS SS  PKLY    SR GR  ST    +D+ FKVEEAETVNVPPPP++KLLVLGG
Sbjct: 6   SRLIHSRSS-FPKLYTMAASRGGRPFSTDSNKIDEPFKVEEAETVNVPPPPTEKLLVLGG 64

Query: 82  NGFVGSNVCKQALDRGLSVASLSRSGR 2
           NGFVGS++C++AL+RGL+VASLSRSGR
Sbjct: 65  NGFVGSHICQEALNRGLTVASLSRSGR 91


>ref|XP_002324359.1| predicted protein [Populus trichocarpa] gi|222865793|gb|EEF02924.1|
           predicted protein [Populus trichocarpa]
          Length = 287

 Score =  115 bits (289), Expect = 3e-24
 Identities = 62/87 (71%), Positives = 72/87 (82%), Gaps = 2/87 (2%)
 Frame = -2

Query: 256 SRLIHSHSSSLPKLYAAGLSRNGRLLST--TVVDQAFKVEEAETVNVPPPPSDKLLVLGG 83
           SRLI S +S L KL+    SRNGR LST    VD+ FKVEEAETVNVPPP ++KLLVLGG
Sbjct: 6   SRLIQSRTS-LSKLFTIAASRNGRYLSTDSNKVDEPFKVEEAETVNVPPPSTEKLLVLGG 64

Query: 82  NGFVGSNVCKQALDRGLSVASLSRSGR 2
           NGFVGS++CK+A+DRGL+VASLSRSGR
Sbjct: 65  NGFVGSHICKEAVDRGLTVASLSRSGR 91


>ref|XP_002263819.1| PREDICTED: uncharacterized protein At1g32220, chloroplastic [Vitis
           vinifera] gi|296082186|emb|CBI21191.3| unnamed protein
           product [Vitis vinifera]
          Length = 287

 Score =  113 bits (282), Expect = 2e-23
 Identities = 59/87 (67%), Positives = 71/87 (81%), Gaps = 2/87 (2%)
 Frame = -2

Query: 256 SRLIHSHSSSLPKLYAAGLSRNGRLLST--TVVDQAFKVEEAETVNVPPPPSDKLLVLGG 83
           S+LIHS SS L + YA    RNGR LST    VD+  KVEEAETV++PPPP++KLLVLGG
Sbjct: 6   SQLIHSRSS-LSRFYAMAAFRNGRCLSTDSNKVDEPLKVEEAETVDIPPPPTEKLLVLGG 64

Query: 82  NGFVGSNVCKQALDRGLSVASLSRSGR 2
           NGFVGS++CK+AL RG++VASLSRSGR
Sbjct: 65  NGFVGSHICKEALSRGIAVASLSRSGR 91


>gb|AEL98729.1| Rossmann-fold NAD(P)-binding domain-containing protein, partial
           [Silene latifolia]
          Length = 283

 Score =  108 bits (270), Expect = 5e-22
 Identities = 59/87 (67%), Positives = 69/87 (79%), Gaps = 2/87 (2%)
 Frame = -2

Query: 256 SRLIHSHSSSLPKLYAAGLSRNGRLLST--TVVDQAFKVEEAETVNVPPPPSDKLLVLGG 83
           SR+IHS  S L KL+   +SRN R LST  T V+ + KVEEAETV VPP PS+KLLVLGG
Sbjct: 2   SRIIHSRIS-LSKLHTLAMSRNWRFLSTESTTVNGSTKVEEAETVQVPPSPSEKLLVLGG 60

Query: 82  NGFVGSNVCKQALDRGLSVASLSRSGR 2
           NGFVGS++CK+ALD G+ VASLSRSGR
Sbjct: 61  NGFVGSHICKEALDHGMPVASLSRSGR 87


Top