BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020245
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containi...   125   4e-27
ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containi...   118   4e-25
ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24
ref|XP_002326370.1| predicted protein [Populus trichocarpa] gi|2...   114   1e-23
ref|XP_003613018.1| Pentatricopeptide repeat-containing protein ...   112   4e-23

>ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
            [Vitis vinifera] gi|296084392|emb|CBI24780.3| unnamed
            protein product [Vitis vinifera]
          Length = 890

 Score =  125 bits (314), Expect = 4e-27
 Identities = 62/95 (65%), Positives = 75/95 (78%)
 Frame = +3

Query: 3    MYAEASALVDMMVKQGHIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEVAWK 182
            +YAEA  LVD MV+ G +P LESYKLL+CGL  EG+ +KAK VF  LL   YNYDEVAWK
Sbjct: 787  VYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWK 846

Query: 183  VLIEGLLKKGLVEECSKLVSIMEENGCKPNSHTYT 287
            VLI+GLLK+ LV+ECS+L+ IMEE GC+PN  TY+
Sbjct: 847  VLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYS 881



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 29/91 (31%), Positives = 52/91 (57%)
 Frame = +3

Query: 12  EASALVDMMVKQGHIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEVAWKVLI 191
           EA  L + M ++G  PN+ +Y +LI GLC E  + +A+ +   +         V +  LI
Sbjct: 317 EALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376

Query: 192 EGLLKKGLVEECSKLVSIMEENGCKPNSHTY 284
           +G  K+G++++  +++ +ME N C PN+ TY
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNSCGPNTRTY 407



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 30/95 (31%), Positives = 49/95 (51%)
 Frame = +3

Query: 3   MYAEASALVDMMVKQGHIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEVAWK 182
           M  +A  ++D+M      PN  +Y  LICGLC +  + KA  +   +L  + +   + + 
Sbjct: 384 MIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYN 443

Query: 183 VLIEGLLKKGLVEECSKLVSIMEENGCKPNSHTYT 287
            LI G  K   +E   +L+S+M ENG  P+  TY+
Sbjct: 444 SLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYS 478



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 29/90 (32%), Positives = 50/90 (55%)
 Frame = +3

Query: 15  ASALVDMMVKQGHIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEVAWKVLIE 194
           A  L+ +M + G +P+  +Y + I  LC EG +++A T+F ++       +EV +  LI+
Sbjct: 458 AYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALID 517

Query: 195 GLLKKGLVEECSKLVSIMEENGCKPNSHTY 284
           G  K G ++    L+  M  + C PNS+TY
Sbjct: 518 GYCKVGKIDVAYSLLERMLNDACLPNSYTY 547


>ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like
            [Glycine max]
          Length = 892

 Score =  118 bits (296), Expect = 4e-25
 Identities = 54/95 (56%), Positives = 75/95 (78%)
 Frame = +3

Query: 3    MYAEASALVDMMVKQGHIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEVAWK 182
            M+ EA  L+D M++  H+ +LESYKLLICGL  + N +KA+ VFC+LLR  YNYDEVAWK
Sbjct: 789  MFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWK 848

Query: 183  VLIEGLLKKGLVEECSKLVSIMEENGCKPNSHTYT 287
            VLI+GL K G V++CS+L+++ME+NGC+ +  TY+
Sbjct: 849  VLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYS 883


>ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like
            [Cucumis sativus] gi|449522905|ref|XP_004168466.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  117 bits (293), Expect = 1e-24
 Identities = 53/95 (55%), Positives = 73/95 (76%)
 Frame = +3

Query: 3    MYAEASALVDMMVKQGHIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEVAWK 182
            +Y EA   +D+M++  H+P+L+S KLL+CGL +EGN +KAK VFC+ L+ EYNYDE+ WK
Sbjct: 808  LYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWK 867

Query: 183  VLIEGLLKKGLVEECSKLVSIMEENGCKPNSHTYT 287
            VLI+GLLKKGL ++CS L  IME  GC+ +  TY+
Sbjct: 868  VLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYS 902



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 32/91 (35%), Positives = 48/91 (52%)
 Frame = +3

Query: 12  EASALVDMMVKQGHIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEVAWKVLI 191
           EA  +   M ++   PN+ +Y +LIC LC + N   AK +   +L        V +  LI
Sbjct: 327 EALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALI 386

Query: 192 EGLLKKGLVEECSKLVSIMEENGCKPNSHTY 284
           +G  KKGL     +++S+ME N C PN+ TY
Sbjct: 387 DGYCKKGLSASALEILSLMESNNCSPNARTY 417



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 30/93 (32%), Positives = 48/93 (51%)
 Frame = +3

Query: 9   AEASALVDMMVKQGHIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEVAWKVL 188
           A A  ++ +M      PN  +Y  LI G C   NI KA ++   +L  +   + V + +L
Sbjct: 396 ASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNIL 455

Query: 189 IEGLLKKGLVEECSKLVSIMEENGCKPNSHTYT 287
           I G  K+G +    KL+S+M E+G  P+  TY+
Sbjct: 456 IHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYS 488


>ref|XP_002326370.1| predicted protein [Populus trichocarpa] gi|222833563|gb|EEE72040.1|
           predicted protein [Populus trichocarpa]
          Length = 107

 Score =  114 bits (284), Expect = 1e-23
 Identities = 54/95 (56%), Positives = 72/95 (75%)
 Frame = +3

Query: 3   MYAEASALVDMMVKQGHIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEVAWK 182
           M + A+ LV+ M++ GH+P LES KLL+CGL +EG  +KAK VF  LL   YNYDEVAWK
Sbjct: 1   MLSSAARLVEAMMEHGHLPLLESCKLLLCGLYDEGENEKAKAVFVHLLLCGYNYDEVAWK 60

Query: 183 VLIEGLLKKGLVEECSKLVSIMEENGCKPNSHTYT 287
           +LI+GLLK GL + CS+L+S+ME+ GC+ +  TYT
Sbjct: 61  ILIDGLLKSGLADRCSELLSVMEKRGCQIDPLTYT 95


>ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355514353|gb|AES95976.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  112 bits (279), Expect = 4e-23
 Identities = 51/95 (53%), Positives = 73/95 (76%)
 Frame = +3

Query: 3    MYAEASALVDMMVKQGHIPNLESYKLLICGLCNEGNIQKAKTVFCTLLRPEYNYDEVAWK 182
            M+ EA  L+D M++  H+ +LESYKLL+CGL  +GN +KA+ +F +LL   YNYDEV WK
Sbjct: 791  MHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWK 850

Query: 183  VLIEGLLKKGLVEECSKLVSIMEENGCKPNSHTYT 287
            VL++GL++KG V+ECS+L  IME+ GC+ +S T+T
Sbjct: 851  VLLDGLVRKGYVDECSQLRDIMEKTGCRLHSDTHT 885