BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020232
         (727 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/ox...   286   2e-75
dbj|BAI53119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   282   4e-74
dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   281   1e-73
emb|CAD11990.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   281   1e-73
sp|P29684.1|RBS_HEVBR RecName: Full=Ribulose bisphosphate carbox...   280   2e-73

>gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Aralia elata]
          Length = 183

 Score =  286 bits (733), Expect = 2e-75
 Identities = 132/164 (80%), Positives = 147/164 (89%)
 Frame = -3

Query: 671 NRATPAQASMVAPFTGLKSTATFPTSRKSADITTIASNGGKVQCMQVWPPRGKKKFETLS 492
           +RA PAQASMVAPFTGLKSTA FP +RK  DIT++ SNGG+VQCM+VWPP G KKFETLS
Sbjct: 15  SRAAPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKVWPPLGLKKFETLS 74

Query: 491 YLPPLTKGELAKEVDYLLRNKWIPCLEFSVRGGFVYREHHRSPGYYDGRYWTMWKLPMFG 312
           YLPPLT  ELAKEVDYLLR+ W+PCLEF +  G+VYRE+HRSPGYYDGRYWTMWKLPMFG
Sbjct: 75  YLPPLTNEELAKEVDYLLRSGWVPCLEFELEHGWVYRENHRSPGYYDGRYWTMWKLPMFG 134

Query: 311 CTDSLQVVNEVDECLKEYPDAFVRIIGFDNVRQVQCISFIAAKP 180
           CTDS QV+NEV+EC KEYP+AF+RIIGFDNVRQVQCISFIA KP
Sbjct: 135 CTDSSQVLNEVEECKKEYPNAFIRIIGFDNVRQVQCISFIAFKP 178


>dbj|BAI53119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Eucalyptus globulus]
          Length = 181

 Score =  282 bits (722), Expect = 4e-74
 Identities = 128/164 (78%), Positives = 146/164 (89%)
 Frame = -3

Query: 671 NRATPAQASMVAPFTGLKSTATFPTSRKSADITTIASNGGKVQCMQVWPPRGKKKFETLS 492
           NRA+PAQASMVAPFTGLKS + FP +RKSADIT++ASNGG+VQCMQVWPP GKKKFETLS
Sbjct: 15  NRASPAQASMVAPFTGLKSASAFPVTRKSADITSLASNGGRVQCMQVWPPIGKKKFETLS 74

Query: 491 YLPPLTKGELAKEVDYLLRNKWIPCLEFSVRGGFVYREHHRSPGYYDGRYWTMWKLPMFG 312
           YLPPL++ EL KE++YLLR  W+PCLEF +  GFVYR++H+SPGYYDGRYWTMWKLPMFG
Sbjct: 75  YLPPLSREELLKEIEYLLRMNWVPCLEFELEKGFVYRDNHKSPGYYDGRYWTMWKLPMFG 134

Query: 311 CTDSLQVVNEVDECLKEYPDAFVRIIGFDNVRQVQCISFIAAKP 180
           CTD LQV  E+DE +K YP+AFVRIIGFDN RQVQCISFIA KP
Sbjct: 135 CTDPLQVFKELDEAIKTYPNAFVRIIGFDNKRQVQCISFIAYKP 178


>dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Panax ginseng]
          Length = 183

 Score =  281 bits (719), Expect = 1e-73
 Identities = 128/167 (76%), Positives = 147/167 (88%)
 Frame = -3

Query: 671 NRATPAQASMVAPFTGLKSTATFPTSRKSADITTIASNGGKVQCMQVWPPRGKKKFETLS 492
           +RA PAQASMVAPFTGLKSTA FP +RK  DIT++ SNGG+VQCM+VWPP G KKFETLS
Sbjct: 15  SRAVPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKVWPPLGLKKFETLS 74

Query: 491 YLPPLTKGELAKEVDYLLRNKWIPCLEFSVRGGFVYREHHRSPGYYDGRYWTMWKLPMFG 312
           YLP LT+ +L+KEVDYLLR+ W+PCLEF +  GFVYREHH SPGYYDGRYWTMWKLPMFG
Sbjct: 75  YLPQLTQEQLSKEVDYLLRSGWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFG 134

Query: 311 CTDSLQVVNEVDECLKEYPDAFVRIIGFDNVRQVQCISFIAAKPQNS 171
           CTDS QV+ EV+EC KEYP+A++RIIGFDNVRQVQCISFIA KP ++
Sbjct: 135 CTDSSQVLKEVEECKKEYPNAYIRIIGFDNVRQVQCISFIAFKPPSA 181


>emb|CAD11990.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Coffea arabica] gi|24940140|emb|CAD11991.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Coffea arabica]
          Length = 181

 Score =  281 bits (718), Expect = 1e-73
 Identities = 125/164 (76%), Positives = 148/164 (90%)
 Frame = -3

Query: 668 RATPAQASMVAPFTGLKSTATFPTSRKSADITTIASNGGKVQCMQVWPPRGKKKFETLSY 489
           RA+PAQASMVAPF GLK+ ++FP S+KS DIT++A+NGG+VQCMQVWPPRG KK+ETLSY
Sbjct: 16  RASPAQASMVAPFNGLKAASSFPISKKSVDITSLATNGGRVQCMQVWPPRGLKKYETLSY 75

Query: 488 LPPLTKGELAKEVDYLLRNKWIPCLEFSVRGGFVYREHHRSPGYYDGRYWTMWKLPMFGC 309
           LP LT  +L KE+DYL+R+ W+PCLEF +  GFVYRE+HRSPGYYDGRYWTMWKLPM+GC
Sbjct: 76  LPDLTDEQLLKEIDYLIRSGWVPCLEFELEKGFVYREYHRSPGYYDGRYWTMWKLPMYGC 135

Query: 308 TDSLQVVNEVDECLKEYPDAFVRIIGFDNVRQVQCISFIAAKPQ 177
           TD+ QV+NEV ECLKEYP+ +VRIIGFDNVRQVQCISFIAAKP+
Sbjct: 136 TDATQVLNEVGECLKEYPNCWVRIIGFDNVRQVQCISFIAAKPK 179


>sp|P29684.1|RBS_HEVBR RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|168217|gb|AAA33361.1|
           ribulose-1,5-bisphosphate carboxylase small subunit
           [Hevea brasiliensis]
          Length = 183

 Score =  280 bits (717), Expect = 2e-73
 Identities = 128/169 (75%), Positives = 151/169 (89%), Gaps = 1/169 (0%)
 Frame = -3

Query: 671 NRATPAQASMVAPFTGLKSTATFPTSRKSA-DITTIASNGGKVQCMQVWPPRGKKKFETL 495
           NRA+PAQASMVAPFTGLKST+ FPT+RK+  DIT+IASNGG+VQCMQVWPPRGKK +ETL
Sbjct: 15  NRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETL 74

Query: 494 SYLPPLTKGELAKEVDYLLRNKWIPCLEFSVRGGFVYREHHRSPGYYDGRYWTMWKLPMF 315
           SYLPPLT+ +LAKEV+YLLR  W+PCLEF +  G VYRE+HRSPGYYDGRYWTMWKLPMF
Sbjct: 75  SYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMF 134

Query: 314 GCTDSLQVVNEVDECLKEYPDAFVRIIGFDNVRQVQCISFIAAKPQNSD 168
           GCTD++QV+ E+DE +K YPD + RIIGFDNVRQVQCISF+A KP+ ++
Sbjct: 135 GCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKGAE 183