BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020216
         (326 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_007475609.1| RNA polymerase beta' subunit [Heliconia coll...   218   4e-55
gb|AEX94835.1| RNA polymerase beta' subunit (chloroplast) [Sanse...   218   4e-55
ref|YP_004769620.1| RNA polymerase beta' subunit (chloroplast) [...   218   4e-55
ref|YP_001595498.1| RNA polymerase beta' subunit-2 [Lemna minor]...   218   4e-55
gb|AEK48482.1| RNA polymerase beta'' subunit (chloroplast) [Colo...   218   5e-55

>ref|YP_007475609.1| RNA polymerase beta' subunit [Heliconia collinsiana]
           gi|449326088|gb|AGE92674.1| RNA polymerase beta' subunit
           [Heliconia collinsiana]
          Length = 1384

 Score =  218 bits (555), Expect = 4e-55
 Identities = 106/108 (98%), Positives = 107/108 (99%)
 Frame = +2

Query: 2   KRLISRLIDHFGMAYTSHILDQVKTLGFQQATAASISLGIDDLLTIPSKGWLVQDAEQQS 181
           KRLISRLIDHFGMAYTSHILDQVKTLGFQQATA SISLGIDDLLTIPSKGWLVQDAEQQS
Sbjct: 20  KRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS 79

Query: 182 LILEEHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP 325
           LILE+HHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP
Sbjct: 80  LILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP 127


>gb|AEX94835.1| RNA polymerase beta' subunit (chloroplast) [Sansevieria
           trifasciata]
          Length = 1384

 Score =  218 bits (555), Expect = 4e-55
 Identities = 106/108 (98%), Positives = 107/108 (99%)
 Frame = +2

Query: 2   KRLISRLIDHFGMAYTSHILDQVKTLGFQQATAASISLGIDDLLTIPSKGWLVQDAEQQS 181
           KRLISRLIDHFGMAYTSHILDQVKTLGFQQATA SISLGIDDLLTIPSKGWLVQDAEQQS
Sbjct: 24  KRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS 83

Query: 182 LILEEHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP 325
           LILE+HHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP
Sbjct: 84  LILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP 131


>ref|YP_004769620.1| RNA polymerase beta' subunit (chloroplast) [Spirodela polyrhiza]
           gi|341834061|gb|AEK94332.1| RNA polymerase beta' subunit
           [Spirodela polyrhiza]
          Length = 1366

 Score =  218 bits (555), Expect = 4e-55
 Identities = 106/108 (98%), Positives = 107/108 (99%)
 Frame = +2

Query: 2   KRLISRLIDHFGMAYTSHILDQVKTLGFQQATAASISLGIDDLLTIPSKGWLVQDAEQQS 181
           KRLISRLIDHFGMAYTSHILDQVKTLGFQQATA SISLGIDDLLTIPSKGWLVQDAEQQS
Sbjct: 20  KRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS 79

Query: 182 LILEEHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP 325
           LILE+HHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP
Sbjct: 80  LILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP 127


>ref|YP_001595498.1| RNA polymerase beta' subunit-2 [Lemna minor]
           gi|212288324|sp|A9L986.1|RPOC2_LEMMI RecName:
           Full=DNA-directed RNA polymerase subunit beta'';
           AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
           polymerase subunit beta''; Short=RNA polymerase subunit
           beta'' gi|88696760|gb|ABD48485.1| RNA polymerase beta'
           subunit-2 [Lemna minor]
          Length = 1366

 Score =  218 bits (555), Expect = 4e-55
 Identities = 106/108 (98%), Positives = 107/108 (99%)
 Frame = +2

Query: 2   KRLISRLIDHFGMAYTSHILDQVKTLGFQQATAASISLGIDDLLTIPSKGWLVQDAEQQS 181
           KRLISRLIDHFGMAYTSHILDQVKTLGFQQATA SISLGIDDLLTIPSKGWLVQDAEQQS
Sbjct: 20  KRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS 79

Query: 182 LILEEHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP 325
           LILE+HHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP
Sbjct: 80  LILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP 127


>gb|AEK48482.1| RNA polymerase beta'' subunit (chloroplast) [Colocasia esculenta]
          Length = 1381

 Score =  218 bits (554), Expect = 5e-55
 Identities = 106/108 (98%), Positives = 106/108 (98%)
 Frame = +2

Query: 2   KRLISRLIDHFGMAYTSHILDQVKTLGFQQATAASISLGIDDLLTIPSKGWLVQDAEQQS 181
           KRLISRLIDHFGMAYTSHILDQVKTLGFQQATA SISLGIDDLLTIPSKGWLVQDAEQQS
Sbjct: 20  KRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS 79

Query: 182 LILEEHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP 325
           LILE HHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP
Sbjct: 80  LILERHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNP 127