BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020125
         (1517 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    94   2e-25
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    90   1e-15
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    71   2e-15
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...    83   3e-15
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 77   5e-15

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
            predicted protein [Populus trichocarpa]
          Length = 517

 Score = 94.4 bits (233), Expect(3) = 2e-25
 Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
 Frame = -1

Query: 1361 ELPVTYFGLPLTSTRLGINDCCPLVEKITCIIQNWKSRCLSHAGRHELIHFVLTTFHVYW 1182
            ELP+ Y G+PL S+RL    C  LV++IT  +++W  R LS+AGR +LI+ VL +  VYW
Sbjct: 53   ELPMKYLGVPLLSSRLKAIYCKGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFSIQVYW 112

Query: 1181 ARTFLLPVTVLDQVSKICNDFVWSGSSLKSSMHHASCLKTALPKK------KDLA*NLE* 1020
            A  FLLP  V+  V +I   F+WSGS ++++    +  +  LPKK      K +    + 
Sbjct: 113  ASLFLLPGQVIKNVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKI 172

Query: 1019 GIL--LWTSLQDCN*R*ESMDKAGVEPTY*REQILAHEDTTRLLV---------GIE*HS 873
             +L  +W    D +          +  T+ R  +L   +   +            I    
Sbjct: 173  ALLKHIWNLCNDSD--------GSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLR 224

Query: 872  SVAVRFTRYVIGSGTNT*VWYDPW---------CGDKILIDDPAAKNQR 753
            S+A    +Y+IG G  T +W+D W          G++ + D   AKN +
Sbjct: 225  SLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAK 273



 Score = 38.5 bits (88), Expect(3) = 2e-25
 Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
 Frame = -3

Query: 735 AKVSYLVTNGEWNT-TVHSMPEGELKIKIRST*SCT*RQS---VWTLEANRVYSSKSAYN 568
           AKV+ L+ N EW T T  ++    +   I S  +    Q    VW    N  +S K A+ 
Sbjct: 272 AKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDELVWLDSPNHRFSVKVAWE 331

Query: 567 ALRIPREKVMWFNLVWRKLVI*YQNILLHIGKQLMAGSLPTHDRL 433
            LR  R+ V W ++VW K  +   + LL +  Q     L T D+L
Sbjct: 332 QLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQ---QKLTTQDKL 373



 Score = 31.2 bits (69), Expect(3) = 2e-25
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 407 SKCCFCHNTRENSKHLFF*CP*TNAVW 327
           ++C  C    E+  HLFF C  T A+W
Sbjct: 382 NRCSLCLRNNEDHNHLFFECSYTKAIW 408


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 90.1 bits (222), Expect = 1e-15
 Identities = 96/388 (24%), Positives = 153/388 (39%), Gaps = 41/388 (10%)
 Frame = -1

Query: 1367 STELPVTYFGLPLTSTRLGINDCCPLVEKITCIIQNWKSRCLSHAGRHELIHFVLTTFHV 1188
            S +LPV Y GLPL + RL   DC PL+E++   I +W SR LS+AGR  LI  VL +   
Sbjct: 764  SGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICN 823

Query: 1187 YWARTFLLPVTVLDQVSKICNDFVWSGSSLKSSMHHASCLKTALPKKKDLA*NLE*GILL 1008
            +W   F LP   + ++ K+C+ F+WSG+ + S+    S      PK +        G L 
Sbjct: 824  FWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDE--------GGLG 875

Query: 1007 WTSLQDCN*R*ESMDKAGVEPTY*REQILAHEDT-------------------------- 906
              SL++ N      D   ++  +   +I++H ++                          
Sbjct: 876  LRSLKEAN------DVCCLKLVW---KIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQG 926

Query: 905  TRLLVGIE*HSSVAVRFTRYVIGSGTNT*VWYDPW---------CGDKILIDDPAAKNQR 753
            + +   +  +  VA   ++  +G+G  T  WYD W          GD+ LID   ++   
Sbjct: 927  SWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMT 986

Query: 752  CMYLWKPK*VIWSQMENGTLLFTVCQKGS*K*RFEVHSHVHEDRVCGL*KQIGYIVQSQP 573
                W  +     Q  +   ++ V +    K  ++  +   ED+V    K   +      
Sbjct: 987  VEEAWTNR----RQRRHRNDVYNVIEDAL-KKSWDTRTET-EDKVLWRGKSDVFRTTFST 1040

Query: 572  IMLSESLERKSCGSIWYGENW*YDTKTFFYILASNLWQEAY------QHMIDW*RKKVLQ 411
                      S    W+   W +   T  Y   S  W  A+        MI+W       
Sbjct: 1041 RDTWHHTRSTSARVPWHKVIW-FSHATPKYSFCS--WLAAHGRLPTGDRMINWANGIA-- 1095

Query: 410  ESKCCFCHNTRENSKHLFF*CP*TNAVW 327
             + C FC  T E   HLFF C  T+ +W
Sbjct: 1096 -TDCIFCQGTLETRDHLFFTCSFTSVIW 1122


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|7267919|emb|CAB78261.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 662

 Score = 70.9 bits (172), Expect(3) = 2e-15
 Identities = 37/105 (35%), Positives = 56/105 (53%)
 Frame = -1

Query: 1358 LPVTYFGLPLTSTRLGINDCCPLVEKITCIIQNWKSRCLSHAGRHELIHFVLTTFHVYWA 1179
            LPV Y  LPL + R    D  PL+E+I   I  W +R LS+AGR  L+  VL +   +W 
Sbjct: 285  LPVRYLCLPLVTKRFTSQDYSPLLEQIKRRIGTWTARFLSYAGRLNLVSSVLWSICNFWL 344

Query: 1178 RTFLLPVTVLDQVSKICNDFVWSGSSLKSSMHHASCLKTALPKKK 1044
              F LP   + ++ K+C+ F+WSG  L ++    +      PK++
Sbjct: 345  SAFRLPRECVREIDKLCSAFLWSGPELSTNKAKIAWETVCRPKRE 389



 Score = 33.9 bits (76), Expect(3) = 2e-15
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 1003 LVYKIVTKGESLWTKRVWNQHIKENKSWHMKIPQDCSWV*SNIL 872
            L+++IV++G+SLW + +    +K N  W  +     SW+   +L
Sbjct: 408  LIWRIVSQGDSLWVQWIRTYLLKRNTFWSFRSASQGSWMWKKLL 451



 Score = 24.6 bits (52), Expect(3) = 2e-15
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 878 HSSVAVRFTRYVIGSGTNT*VWYDPWCGDKILIDDPAAKNQRCMYLWKPK 729
           +   A  F++  I +G     WYD W     LID    + Q  M + K K
Sbjct: 453 YRDTAKAFSKVDIRNGETASFWYDDWSSKGRLIDVLGERGQFDMGISKFK 502


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score = 82.8 bits (203), Expect(2) = 3e-15
 Identities = 41/106 (38%), Positives = 59/106 (55%)
 Frame = -1

Query: 1361 ELPVTYFGLPLTSTRLGINDCCPLVEKITCIIQNWKSRCLSHAGRHELIHFVLTTFHVYW 1182
            ELP  Y G+PLTS +L    C PLVE IT   Q W ++ LS+AGR +LI  +L++   YW
Sbjct: 751  ELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYW 810

Query: 1181 ARTFLLPVTVLDQVSKICNDFVWSGSSLKSSMHHASCLKTALPKKK 1044
            A  F L   V+  V K+C  F+W+G + ++     +      PK +
Sbjct: 811  AHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQRPKSR 856



 Score = 26.6 bits (57), Expect(2) = 3e-15
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -2

Query: 1024 NKASYCGLVYKIVTKGESLWTKRVWNQHIKENKSWHMKIPQDCSWV 887
            N+A+   L++ I  K + LW + + + +IK      + I    +W+
Sbjct: 868  NRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILTVNISNQTTWI 913


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 76.6 bits (187), Expect(2) = 5e-15
 Identities = 34/90 (37%), Positives = 55/90 (61%)
 Frame = -1

Query: 1367 STELPVTYFGLPLTSTRLGINDCCPLVEKITCIIQNWKSRCLSHAGRHELIHFVLTTFHV 1188
            S +LPV Y GLPL + ++   D  PL++K+   I +W +R LS+AGR  LI+ V+ +   
Sbjct: 337  SGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSN 396

Query: 1187 YWARTFLLPVTVLDQVSKICNDFVWSGSSL 1098
            +W   + LP   + ++ K+C+ F+WSG  L
Sbjct: 397  FWMSAYRLPAGCIKEIEKLCSAFLWSGPEL 426



 Score = 32.0 bits (71), Expect(2) = 5e-15
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 1024 NKASYCGLVYKIVTKGESLWTKRVWNQHIKENKSW 920
            NK S   L++++V++  SLW   VW   I++   W
Sbjct: 456  NKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFW 490