BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020070
         (911 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631528.1| PREDICTED: pentatricopeptide repeat-containi...   224   2e-56
ref|XP_003516509.1| PREDICTED: pentatricopeptide repeat-containi...   218   2e-54
ref|XP_002519945.1| pentatricopeptide repeat-containing protein,...   218   2e-54
ref|XP_003612457.1| Pentatricopeptide repeat-containing protein ...   208   1e-51
gb|AFK33630.1| unknown [Lotus japonicus]                              204   2e-50

>ref|XP_003631528.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31790-like [Vitis vinifera]
          Length = 414

 Score =  224 bits (572), Expect = 2e-56
 Identities = 131/272 (48%), Positives = 174/272 (63%), Gaps = 2/272 (0%)
 Frame = -1

Query: 911 LDSARELFDKMIV--KDSISWAIMIVGCVENEEYLEALTLFRYKQMGYQCYESSKESMWG 738
           + +AR +FDKM V  K+SISWAIM+   ++N  Y EA+ LF   QM  + + +    +  
Sbjct: 128 IHTARHMFDKMNVLNKNSISWAIMLAAYMDNGFYEEAIFLF--VQM-MELHSTIMLELPA 184

Query: 737 LVVDYVLRACVSVGDYEVGKQVHGLVLKMNCFSDDVFLGSLFINFYGKLGCLRSARCVFD 558
            +   VL+ACV   +  +GKQVHG +LK+  ++ ++FL    I+FYGK  CL  A  VFD
Sbjct: 185 WIFICVLKACVHTMNLTLGKQVHGWLLKVG-YATNLFLSCYLISFYGKFRCLDDADFVFD 243

Query: 557 NMRLCDTVIWTTMIVVYSREENFQEVLEVFREMGRVGGAKKNNFTLSSVIRACGRLGDEL 378
                +TVIWT  +V   + E   E L  F EMGR G  K+N FT SSV+RACGR+ D  
Sbjct: 244 QTSERNTVIWTAKMVNKCQGEYMHEALVAFTEMGRAG-VKRNEFTYSSVLRACGRMKDH- 301

Query: 377 SFFGRQIHGNAIRIGVESDQFVQCSLVDMYGKCGLVKDARKVFEMTKVTGSKKRRNQVCW 198
              GR IH + I++G+ESD +VQC LVDMYGKCGL+ +AR+VFE    T    + N VCW
Sbjct: 302 GRCGRLIHASTIKLGLESDIYVQCGLVDMYGKCGLLVEARRVFETVSDT---NKTNIVCW 358

Query: 197 NAMLTGYTQNGFYNDAIKFLYQMKSA*VQPLE 102
           NAMLTGY ++G Y +AIKFLYQMK+A +QP E
Sbjct: 359 NAMLTGYIRHGLYIEAIKFLYQMKAAGIQPQE 390


>ref|XP_003516509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31790-like [Glycine max]
          Length = 423

 Score =  218 bits (555), Expect = 2e-54
 Identities = 122/272 (44%), Positives = 172/272 (63%), Gaps = 2/272 (0%)
 Frame = -1

Query: 911 LDSARELFDKMIVKDSISWAIMIVGCVENEEYLEALTLF--RYKQMGYQCYESSKESMWG 738
           L++AR +FDKM V+D  +WA + V   +N +Y EA  +F     Q+G   +      +W 
Sbjct: 148 LENARHMFDKMRVRDFNTWATLFVAYYDNTDYEEATNVFVNMLTQLGMMEFPPW---IWA 204

Query: 737 LVVDYVLRACVSVGDYEVGKQVHGLVLKMNCFSDDVFLGSLFINFYGKLGCLRSARCVFD 558
            +    LRAC    +  +G QVHG +LK+    D V L S  INFYG+  CL  A  VFD
Sbjct: 205 CL----LRACACTVNVPLGMQVHGWLLKLGT-CDHVLLSSSLINFYGRFTCLEDASVVFD 259

Query: 557 NMRLCDTVIWTTMIVVYSREENFQEVLEVFREMGRVGGAKKNNFTLSSVIRACGRLGDEL 378
            +   +T+ WT  IV   RE +F EV + F+EMG + G KK+ FT SSV++ACGR+ ++ 
Sbjct: 260 GVSRHNTLTWTAKIVSGCRERHFSEVFDDFKEMG-MRGVKKDCFTFSSVLKACGRMLNQ- 317

Query: 377 SFFGRQIHGNAIRIGVESDQFVQCSLVDMYGKCGLVKDARKVFEMTKVTGSKKRRNQVCW 198
              G Q+H +AI++G+ SD +VQCSL+ MYG+CGL++DA++VFEM     S++ R   CW
Sbjct: 318 ERCGEQVHVDAIKLGLVSDHYVQCSLIAMYGRCGLLEDAKRVFEM-----SQEERKVDCW 372

Query: 197 NAMLTGYTQNGFYNDAIKFLYQMKSA*VQPLE 102
           NAML GY QNG Y +A+KFLYQM++A +QP E
Sbjct: 373 NAMLMGYIQNGLYIEAVKFLYQMQAAGMQPRE 404



 Score = 63.5 bits (153), Expect = 6e-08
 Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 1/199 (0%)
 Frame = -1

Query: 722 VLRACVSVGDYEVGKQVHGLVLKMNCFSDDVFLGSLFINFYGKLGCLRSARCVFDNMRLC 543
           +++ C   GD E   ++   + K        FL  + + F    G L +AR +FD MR+ 
Sbjct: 103 LIKECTVSGDPETAIELATHISKSGIKPPLPFLNRILVMFVS-CGLLENARHMFDKMRVR 161

Query: 542 DTVIWTTMIVVYSREENFQEVLEVFREM-GRVGGAKKNNFTLSSVIRACGRLGDELSFFG 366
           D   W T+ V Y    +++E   VF  M  ++G  +   +  + ++RAC    +     G
Sbjct: 162 DFNTWATLFVAYYDNTDYEEATNVFVNMLTQLGMMEFPPWIWACLLRACACTVNVP--LG 219

Query: 365 RQIHGNAIRIGVESDQFVQCSLVDMYGKCGLVKDARKVFEMTKVTGSKKRRNQVCWNAML 186
            Q+HG  +++G      +  SL++ YG+   ++DA  VF+         R N + W A +
Sbjct: 220 MQVHGWLLKLGTCDHVLLSSSLINFYGRFTCLEDASVVFD------GVSRHNTLTWTAKI 273

Query: 185 TGYTQNGFYNDAIKFLYQM 129
               +   +++      +M
Sbjct: 274 VSGCRERHFSEVFDDFKEM 292


>ref|XP_002519945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540991|gb|EEF42549.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 403

 Score =  218 bits (554), Expect = 2e-54
 Identities = 115/270 (42%), Positives = 170/270 (62%), Gaps = 3/270 (1%)
 Frame = -1

Query: 911 LDSARELFDKM-IVKDSISWAIMIVGCVENEEYLEALTLFRYKQMGYQCYESSKESM--W 741
           LD AR LFDKM + KD ISW I+IVGC  N +Y   + LF    + +  Y+     +  W
Sbjct: 125 LDIARNLFDKMPLKKDFISWVIVIVGCFSNSKYEAGINLFIDMLLQHSVYDGLMFDLNTW 184

Query: 740 GLVVDYVLRACVSVGDYEVGKQVHGLVLKMNCFSDDVFLGSLFINFYGKLGCLRSARCVF 561
            +++  +++ C+   +  +GKQVHG++ K+   S+  F  SL ++FYGKLGCL     VF
Sbjct: 185 NIIILCIIKCCIYSMNISLGKQVHGILFKVGLTSEISFNVSL-MDFYGKLGCLEDVNSVF 243

Query: 560 DNMRLCDTVIWTTMIVVYSREENFQEVLEVFREMGRVGGAKKNNFTLSSVIRACGRLGDE 381
           + +   +T  WT  IV   R + F EV+E F+EMG  G  K+N+FT+SSV+RAC R+GD 
Sbjct: 244 NKLDNHNTATWTAKIVNSCRNQRFYEVIEDFKEMGEAG-IKRNSFTVSSVLRACARMGDG 302

Query: 380 LSFFGRQIHGNAIRIGVESDQFVQCSLVDMYGKCGLVKDARKVFEMTKVTGSKKRRNQVC 201
            +  G+Q+H   I++G+ESD FVQC L+ MYGKCG+++ A+KVFE+        + N  C
Sbjct: 303 GNC-GKQVHVIVIKLGLESDAFVQCGLIAMYGKCGMIRKAKKVFELV-----IDKTNTAC 356

Query: 200 WNAMLTGYTQNGFYNDAIKFLYQMKSA*VQ 111
           WNA+L  Y +N  + +A+K LYQM++A +Q
Sbjct: 357 WNALLMAYVRNELFIEAMKLLYQMEAAKIQ 386


>ref|XP_003612457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513792|gb|AES95415.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 418

 Score =  208 bits (530), Expect = 1e-51
 Identities = 121/275 (44%), Positives = 168/275 (61%), Gaps = 5/275 (1%)
 Frame = -1

Query: 911 LDSARELFDKMIVKDSISWAIMIVGCVENEEYLEALTLF-----RYKQMGYQCYESSKES 747
           L++AR +FD M V+D  SWA + V   EN EY  A+ +F     +   MG+    S    
Sbjct: 141 LENARRVFDVMSVRDFHSWATLFVSYYENGEYENAIDVFVSMLCQLDVMGF----SFPPW 196

Query: 746 MWGLVVDYVLRACVSVGDYEVGKQVHGLVLKMNCFSDDVFLGSLFINFYGKLGCLRSARC 567
           +W  +    L+AC    +  +G QVHG +LK+    D V + S  I FYG+  CL  A  
Sbjct: 197 IWSCL----LKACACTMNVPLGMQVHGCLLKLGA-CDHVLISSSLIRFYGRFKCLEDANM 251

Query: 566 VFDNMRLCDTVIWTTMIVVYSREENFQEVLEVFREMGRVGGAKKNNFTLSSVIRACGRLG 387
           VF+ +   +T+ WT  IV   RE +F E L  F++MGRVG  KK++FT SSV++ACGR+ 
Sbjct: 252 VFNRVSRHNTLTWTAKIVSSCRERHFSEALGDFKKMGRVG-VKKDSFTFSSVLKACGRMQ 310

Query: 386 DELSFFGRQIHGNAIRIGVESDQFVQCSLVDMYGKCGLVKDARKVFEMTKVTGSKKRRNQ 207
           +  S  G Q+H +AI++G++SD +VQCSL+ MYG+ GL++DA  VFEMT     +  RN 
Sbjct: 311 NRGSC-GEQVHADAIKLGLDSDSYVQCSLIAMYGRSGLLRDAELVFEMT-----RNERNV 364

Query: 206 VCWNAMLTGYTQNGFYNDAIKFLYQMKSA*VQPLE 102
              NAML GY QNG Y +A+KF+YQMK+A VQP E
Sbjct: 365 DSLNAMLMGYIQNGLYIEAVKFVYQMKAAGVQPHE 399



 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 3/195 (1%)
 Frame = -1

Query: 722 VLRACVSVGDYEVGKQVHGLVLKMNCFSDDVFLGSLFINFYGKLGCLRSARCVFDNMRLC 543
           +++ C    D E   ++H  ++          L  + I F    G L +AR VFD M + 
Sbjct: 96  LVKECTLSTDPETAIELHTQIITRGIELPLTLLNRILIMFVS-CGLLENARRVFDVMSVR 154

Query: 542 DTVIWTTMIVVYSREENFQEVLEVFREM---GRVGGAKKNNFTLSSVIRACGRLGDELSF 372
           D   W T+ V Y     ++  ++VF  M     V G     +  S +++AC    +    
Sbjct: 155 DFHSWATLFVSYYENGEYENAIDVFVSMLCQLDVMGFSFPPWIWSCLLKACACTMNVP-- 212

Query: 371 FGRQIHGNAIRIGVESDQFVQCSLVDMYGKCGLVKDARKVFEMTKVTGSKKRRNQVCWNA 192
            G Q+HG  +++G      +  SL+  YG+   ++DA  VF          R N + W A
Sbjct: 213 LGMQVHGCLLKLGACDHVLISSSLIRFYGRFKCLEDANMVFNRV------SRHNTLTWTA 266

Query: 191 MLTGYTQNGFYNDAI 147
            +    +   +++A+
Sbjct: 267 KIVSSCRERHFSEAL 281


>gb|AFK33630.1| unknown [Lotus japonicus]
          Length = 356

 Score =  204 bits (519), Expect = 2e-50
 Identities = 116/272 (42%), Positives = 166/272 (61%), Gaps = 2/272 (0%)
 Frame = -1

Query: 911 LDSARELFDKMIVKDSISWAIMIVGCVENEEYLEALTLF--RYKQMGYQCYESSKESMWG 738
           LD A +LFD M VKD  SWA + +   +N +Y EA+ +F     Q+G      S+   W 
Sbjct: 81  LDYACQLFDAMPVKDFNSWATLFIAYYDNADYEEAIDVFLAMLHQLGM-----SEFPPW- 134

Query: 737 LVVDYVLRACVSVGDYEVGKQVHGLVLKMNCFSDDVFLGSLFINFYGKLGCLRSARCVFD 558
            +    L+AC  + +  +G QVHG +LK+    D V L S  I FYG+  C++ A  VF+
Sbjct: 135 -ICACFLKACACIENIPLGMQVHGWLLKLGT-CDHVLLSSSLIRFYGRFTCVKDANAVFN 192

Query: 557 NMRLCDTVIWTTMIVVYSREENFQEVLEVFREMGRVGGAKKNNFTLSSVIRACGRLGDEL 378
            +   +T  WT  IV   RE +F EV   F+EMGR G  KK+ +T SSV++ACG++ D  
Sbjct: 193 KLSRHNTSTWTAKIVSGCREMDFPEVFNDFKEMGRQG-IKKDTYTFSSVLKACGKMMDH- 250

Query: 377 SFFGRQIHGNAIRIGVESDQFVQCSLVDMYGKCGLVKDARKVFEMTKVTGSKKRRNQVCW 198
              G Q+H +A+++G+ SD +VQCSL+ MYG+ GL++DA++VFE      S+  RN   W
Sbjct: 251 GRCGEQVHADAMKLGLASDNYVQCSLIAMYGRSGLLRDAKQVFET-----SRSERNVDSW 305

Query: 197 NAMLTGYTQNGFYNDAIKFLYQMKSA*VQPLE 102
           NAML GY +NG Y +A+KFLYQMK+A ++P E
Sbjct: 306 NAMLMGYLENGLYIEAVKFLYQMKAAGLKPHE 337