BLASTX nr result
ID: Coptis21_contig00020002
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00020002
(441 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003548485.1| PREDICTED: DNA cross-link repair protein SNM... 221 6e-56
ref|XP_002512800.1| DNA cross-link repair protein pso2/snm1, put... 218 4e-55
ref|XP_002321063.1| predicted protein [Populus trichocarpa] gi|2... 218 4e-55
ref|XP_003624539.1| DNA cross-link repair protein SNM1 [Medicago... 209 1e-52
ref|NP_189302.1| DNA cross-link repair protein SNM1 [Arabidopsis... 202 3e-50
>ref|XP_003548485.1| PREDICTED: DNA cross-link repair protein SNM1-like [Glycine max]
Length = 505
Score = 221 bits (562), Expect = 6e-56
Identities = 100/146 (68%), Positives = 126/146 (86%)
Frame = -2
Query: 440 TTYCNPKYRFPSKQDVLHFVVKIARQTLKKQPKTLIIVGAYSVGKECVYLAISDALGVKI 261
TTYCNPKYRFPSK++VL++VVKI + LK P+TL++VGAYS+GKECVYLAIS ALGVKI
Sbjct: 306 TTYCNPKYRFPSKEEVLNYVVKITKNHLKIHPRTLVVVGAYSIGKECVYLAISKALGVKI 365
Query: 260 HTNASRRRVLQSFGWPELSGKLCSHGKDTPLHILPLSSLRHETLKKYLDTFAYEYTTLLA 81
+ NASRRR+LQ+FGWP+LS KLC++G +T LH+LP+SSLR ETLK YL T+ ++T +LA
Sbjct: 366 YANASRRRILQAFGWPDLSDKLCTNGNNTLLHVLPMSSLRVETLKDYLKTYKEQFTAILA 425
Query: 80 FRPTGWTYSETLGNQLDLIRPTSKGN 3
FRPTGWT+SE + N L+LI+P SKGN
Sbjct: 426 FRPTGWTFSEKISNDLELIKPVSKGN 451
>ref|XP_002512800.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus
communis] gi|223547811|gb|EEF49303.1| DNA cross-link
repair protein pso2/snm1, putative [Ricinus communis]
Length = 493
Score = 218 bits (555), Expect = 4e-55
Identities = 99/146 (67%), Positives = 125/146 (85%)
Frame = -2
Query: 440 TTYCNPKYRFPSKQDVLHFVVKIARQTLKKQPKTLIIVGAYSVGKECVYLAISDALGVKI 261
TTYCNPKY+FPSK+DVL++VV++ + LK+QP+TLI+VGAYS+GKECVYL+IS ALGVKI
Sbjct: 294 TTYCNPKYKFPSKEDVLNYVVRVTKDFLKQQPETLIVVGAYSIGKECVYLSISKALGVKI 353
Query: 260 HTNASRRRVLQSFGWPELSGKLCSHGKDTPLHILPLSSLRHETLKKYLDTFAYEYTTLLA 81
+ +ASRR++L+SFGW +LS LC+ KDTPLH+LP+SSLR ETLK YL + +Y +LA
Sbjct: 354 YASASRRQILESFGWSDLSRSLCTQPKDTPLHVLPISSLRVETLKDYLKKYINQYRAVLA 413
Query: 80 FRPTGWTYSETLGNQLDLIRPTSKGN 3
FRPTGWTYSE +G +LDLIRP SKGN
Sbjct: 414 FRPTGWTYSENVGKKLDLIRPISKGN 439
>ref|XP_002321063.1| predicted protein [Populus trichocarpa] gi|222861836|gb|EEE99378.1|
predicted protein [Populus trichocarpa]
Length = 382
Score = 218 bits (555), Expect = 4e-55
Identities = 100/146 (68%), Positives = 123/146 (84%)
Frame = -2
Query: 440 TTYCNPKYRFPSKQDVLHFVVKIARQTLKKQPKTLIIVGAYSVGKECVYLAISDALGVKI 261
TTYCNPKY+FPSK+DVL +VV++ + +LKKQPKTL++VGAYS+GKE VYLAIS ALGVKI
Sbjct: 183 TTYCNPKYKFPSKEDVLSYVVRVTKSSLKKQPKTLVVVGAYSIGKESVYLAISKALGVKI 242
Query: 260 HTNASRRRVLQSFGWPELSGKLCSHGKDTPLHILPLSSLRHETLKKYLDTFAYEYTTLLA 81
+ N SRRR+LQSFGWP+LS LC+ DT LH+LP+SSLR+ETLK YL +Y +LA
Sbjct: 243 YANNSRRRILQSFGWPDLSTNLCTKAIDTCLHVLPISSLRYETLKDYLKNHVNQYAAVLA 302
Query: 80 FRPTGWTYSETLGNQLDLIRPTSKGN 3
FRPTGWTYSE LG +LDLIRP+++GN
Sbjct: 303 FRPTGWTYSEGLGRELDLIRPSTRGN 328
>ref|XP_003624539.1| DNA cross-link repair protein SNM1 [Medicago truncatula]
gi|87241310|gb|ABD33168.1| DNA repair
metallo-beta-lactamase [Medicago truncatula]
gi|355499554|gb|AES80757.1| DNA cross-link repair
protein SNM1 [Medicago truncatula]
Length = 511
Score = 209 bits (533), Expect = 1e-52
Identities = 96/146 (65%), Positives = 122/146 (83%)
Frame = -2
Query: 440 TTYCNPKYRFPSKQDVLHFVVKIARQTLKKQPKTLIIVGAYSVGKECVYLAISDALGVKI 261
TTYCNPKY+FPSK DVL++VVKI LKK P+TL++VGAYS+GKECVYLAIS ALGVKI
Sbjct: 312 TTYCNPKYKFPSKDDVLNYVVKITNNHLKKYPRTLVVVGAYSIGKECVYLAISKALGVKI 371
Query: 260 HTNASRRRVLQSFGWPELSGKLCSHGKDTPLHILPLSSLRHETLKKYLDTFAYEYTTLLA 81
H NASRRR+L ++ P+ S +LC++G +T LH+LP+SSLR ETLK+YL T+ ++T++LA
Sbjct: 372 HVNASRRRILLAYDCPDYSDRLCTNGNNTLLHVLPMSSLRIETLKEYLKTYKEQFTSVLA 431
Query: 80 FRPTGWTYSETLGNQLDLIRPTSKGN 3
FRPTGWT+SE +GN L LI+P S GN
Sbjct: 432 FRPTGWTFSEKIGNDLALIKPVSNGN 457
>ref|NP_189302.1| DNA cross-link repair protein SNM1 [Arabidopsis thaliana]
gi|30688447|ref|NP_850635.1| DNA cross-link repair
protein SNM1 [Arabidopsis thaliana]
gi|79313637|ref|NP_001030773.1| DNA cross-link repair
protein SNM1 [Arabidopsis thaliana]
gi|73621911|sp|Q38961.1|SNM1_ARATH RecName: Full=DNA
cross-link repair protein SNM1; Short=AtSNM1
gi|1402886|emb|CAA66817.1| hypothetical protein
[Arabidopsis thaliana] gi|11994302|dbj|BAB01732.1|
unnamed protein product [Arabidopsis thaliana]
gi|26449933|dbj|BAC42087.1| unknown protein [Arabidopsis
thaliana] gi|28827378|gb|AAO50533.1| unknown protein
[Arabidopsis thaliana] gi|332643675|gb|AEE77196.1| DNA
cross-link repair protein SNM1 [Arabidopsis thaliana]
gi|332643676|gb|AEE77197.1| DNA cross-link repair
protein SNM1 [Arabidopsis thaliana]
gi|332643677|gb|AEE77198.1| DNA cross-link repair
protein SNM1 [Arabidopsis thaliana]
Length = 484
Score = 202 bits (513), Expect = 3e-50
Identities = 93/145 (64%), Positives = 119/145 (82%)
Frame = -2
Query: 440 TTYCNPKYRFPSKQDVLHFVVKIARQTLKKQPKTLIIVGAYSVGKECVYLAISDALGVKI 261
TTYCNP+Y+FPSK+DVL +VV+I + L+KQPKTLI+VG+YS+GKECVYLAI+ ALGVKI
Sbjct: 285 TTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGSYSIGKECVYLAIAKALGVKI 344
Query: 260 HTNASRRRVLQSFGWPELSGKLCSHGKDTPLHILPLSSLRHETLKKYLDTFAYEYTTLLA 81
NASRRR+LQSFGW ++S L + GK T LH+LP+SSL+ E L ++L + +Y +LA
Sbjct: 345 FANASRRRILQSFGWDDISKNLSTDGKATCLHVLPMSSLKVERLDEHLKIYREQYGAVLA 404
Query: 80 FRPTGWTYSETLGNQLDLIRPTSKG 6
FRPTGWTYSE +G LDLI+PTS+G
Sbjct: 405 FRPTGWTYSEKIGEHLDLIKPTSRG 429