BLASTX nr result
ID: Coptis21_contig00019990
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00019990
(1305 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V... 589 e-166
ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus comm... 562 e-158
ref|XP_004137446.1| PREDICTED: DNA polymerase alpha subunit B-li... 521 e-145
ref|XP_003537544.1| PREDICTED: DNA polymerase alpha subunit B-li... 495 e-137
ref|XP_003552790.1| PREDICTED: DNA polymerase alpha subunit B-li... 494 e-137
>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
gi|297738371|emb|CBI27572.3| unnamed protein product
[Vitis vinifera]
Length = 623
Score = 589 bits (1518), Expect = e-166
Identities = 298/431 (69%), Positives = 342/431 (79%), Gaps = 2/431 (0%)
Frame = +1
Query: 19 MEQEIKAEFERSGFTL--DQEEDILKKCLTFCINYKLSASDLVSSWEVYYLNRQLNGSVV 192
ME+EI EF++ GF+ ++EE++LKKCLTFCINYKLS SDLVSSWEVYYLNRQL+ SVV
Sbjct: 1 MEEEIMLEFKKIGFSFHKEEEEEVLKKCLTFCINYKLSPSDLVSSWEVYYLNRQLDESVV 60
Query: 193 QNGHMDGFLLHLQNEQKESLIKEEAHPHIYSSSDVDMILSEEHEENKEGTIGTPVDRKER 372
N MDGFLLHLQNEQKE++IKEE H HIYSS+DVDMILS+EHEE KE +GTP DR R
Sbjct: 61 GNALMDGFLLHLQNEQKEAVIKEEPHLHIYSSNDVDMILSDEHEEIKEDILGTPSDRSGR 120
Query: 373 LYTETIDSMPGTNGIVPSSGKPSRLSTSHVTPFGQRTNKFVVQFTLNEFAKKENDSREQE 552
+ + DS TNG S GKPS +HVTPFG+RT+KFVVQ T+N EN E +
Sbjct: 121 HHADPFDSAQRTNGNSSSYGKPS----NHVTPFGKRTSKFVVQLTVNNPPSAENGKNENK 176
Query: 553 IVGHEDDIIRRVQPSERCSLEVQRSWPESGCRFMYDRIEDKFNSLENRIRRLTTAFVASG 732
+DDIIRRVQPS+RCSL V S P GCRFMYDRIED+FNSLENRI++ TTA VA+G
Sbjct: 177 FENVDDDIIRRVQPSKRCSLLVHGSRPGPGCRFMYDRIEDRFNSLENRIKKHTTALVATG 236
Query: 733 LYEESVDPTMASQKSAFSVGMISCDGEGRLNEKSILLQGSVEQSGGQRVRLDLQKLTQYS 912
LY+E DPT+ASQKS F+ GMI CDGEGRLNEKSILLQ SV+ SGGQRVRLDL KL Q+S
Sbjct: 237 LYKEPTDPTVASQKSVFATGMICCDGEGRLNEKSILLQSSVQHSGGQRVRLDLSKLNQFS 296
Query: 913 FFPGQVVGVEGHNPSGHCLVASKVFDSFPFSVSPDVEFPPAKKQAMDHEFQPDSPSSTPE 1092
FPGQVVG+EGHNPSGHCL+ASK+ DS P S DV+ PAKKQA D EFQ S
Sbjct: 297 IFPGQVVGIEGHNPSGHCLIASKILDSIPVSAPTDVDLHPAKKQARDEEFQSADSSHKLA 356
Query: 1093 KLSLVIAAGPFTTTDNLLFEPLVELLAYATRKQPQLLMLLGPFIDFEHPEIRKGTIDRSF 1272
+LSL++AAGPFTTTDNLLFEPL ELLAYA RK PQLL+LLGPF+D EHPEIRKGT+DRSF
Sbjct: 357 ELSLMVAAGPFTTTDNLLFEPLTELLAYARRKMPQLLILLGPFVDSEHPEIRKGTVDRSF 416
Query: 1273 DDIFHSDILRR 1305
D+IFH +ILRR
Sbjct: 417 DEIFHLEILRR 427
>ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus communis]
gi|223546049|gb|EEF47552.1| alpha DNA polymerase,
putative [Ricinus communis]
Length = 621
Score = 562 bits (1448), Expect = e-158
Identities = 282/430 (65%), Positives = 335/430 (77%), Gaps = 1/430 (0%)
Frame = +1
Query: 19 MEQEIKAEFERSGFTLDQEED-ILKKCLTFCINYKLSASDLVSSWEVYYLNRQLNGSVVQ 195
ME+EIKAEF +SGFTLD EE+ ILKKCLTFCINY L +DLVSSWEVYYLNRQL+ S VQ
Sbjct: 1 MEEEIKAEFNKSGFTLDHEEEQILKKCLTFCINYNLKPADLVSSWEVYYLNRQLDESTVQ 60
Query: 196 NGHMDGFLLHLQNEQKESLIKEEAHPHIYSSSDVDMILSEEHEENKEGTIGTPVDRKERL 375
NG MDGFLLHLQNEQKE++IKEE HIYSS DVDMIL++E E+ KE GTP D ++L
Sbjct: 61 NGEMDGFLLHLQNEQKEAIIKEEPDLHIYSSKDVDMILNDEGEDLKEEVPGTPTDESQKL 120
Query: 376 YTETIDSMPGTNGIVPSSGKPSRLSTSHVTPFGQRTNKFVVQFTLNEFAKKENDSREQEI 555
+E DS+ + G SSGK S+ HVTPFG+RT+KFVV+F +N EN E
Sbjct: 121 NSEPFDSIIKSTGNGYSSGKRSK----HVTPFGRRTDKFVVKFNINNLPDTENGDNEHVR 176
Query: 556 VGHEDDIIRRVQPSERCSLEVQRSWPESGCRFMYDRIEDKFNSLENRIRRLTTAFVASGL 735
EDDII+RVQP ++CS V S PE GCRFMYDRIED+FN+L+NRIR+ A VASGL
Sbjct: 177 ENMEDDIIKRVQPRKKCSFVVHGSGPEPGCRFMYDRIEDRFNALDNRIRKHAAALVASGL 236
Query: 736 YEESVDPTMASQKSAFSVGMISCDGEGRLNEKSILLQGSVEQSGGQRVRLDLQKLTQYSF 915
YEE DPT+ASQ++ F+VGMI CDGEGRLNEKS+LLQ S+E SGGQRV LDL L+Q+S
Sbjct: 237 YEEPTDPTVASQRNVFAVGMICCDGEGRLNEKSVLLQSSIEHSGGQRVHLDLHNLSQFSI 296
Query: 916 FPGQVVGVEGHNPSGHCLVASKVFDSFPFSVSPDVEFPPAKKQAMDHEFQPDSPSSTPEK 1095
FPGQ+V +EGHNPSGHCLVASK+ DS P S +PD PPAKKQA+D E + S T E
Sbjct: 297 FPGQIVAIEGHNPSGHCLVASKLVDSIPLSAAPDGNLPPAKKQALDQEIESIGSSCTQE- 355
Query: 1096 LSLVIAAGPFTTTDNLLFEPLVELLAYATRKQPQLLMLLGPFIDFEHPEIRKGTIDRSFD 1275
+S++IA+GPFTT DNL+FEPL ELLAYA+RK PQLL+LLGPF+D EHPEI+KGT+D SFD
Sbjct: 356 ISVLIASGPFTTLDNLMFEPLTELLAYASRKLPQLLILLGPFVDSEHPEIKKGTVDGSFD 415
Query: 1276 DIFHSDILRR 1305
+IF +ILRR
Sbjct: 416 EIFRQEILRR 425
>ref|XP_004137446.1| PREDICTED: DNA polymerase alpha subunit B-like [Cucumis sativus]
gi|449486914|ref|XP_004157440.1| PREDICTED: DNA
polymerase alpha subunit B-like [Cucumis sativus]
Length = 622
Score = 521 bits (1343), Expect = e-145
Identities = 260/431 (60%), Positives = 328/431 (76%), Gaps = 2/431 (0%)
Frame = +1
Query: 19 MEQEIKAEFERSGFTLDQEEDILKKCLTFCINYKLSASDLVSSWEVYYLNRQLNGSVVQN 198
ME+EI EF+RSGFT D+EE+ILKKC+TFC+NY L SD+VSSWEVYYLNR L+GSVV+
Sbjct: 1 MEEEIGEEFKRSGFTFDEEEEILKKCVTFCVNYNLKPSDIVSSWEVYYLNRLLDGSVVEL 60
Query: 199 GHMDGFLLHLQNEQKESLIKEEAHPHIYSSSDVDMILSEEHEENKEGTIGTPVDRKERLY 378
+DGFL HLQNEQKE++IK E H+YSS DVD+IL++E+E+ E + TP + + L+
Sbjct: 61 EQLDGFLQHLQNEQKETVIKGEPDLHVYSSKDVDVILNDENEDLNEDILKTPNGKSQSLH 120
Query: 379 TETIDSMPGTNGIVPSSGKPSRLSTSHVTPFGQRTNKFVVQFTLNEFAKKENDSREQEIV 558
E +D P TN + SSGKPS+ H TPFGQRT KFVV+F +N +
Sbjct: 121 KERLDLTPYTNEGLFSSGKPSK----HETPFGQRTEKFVVRFNINNMPDMVTAVKVDNSE 176
Query: 559 GHEDDIIRRVQPSERCSLEVQRSW--PESGCRFMYDRIEDKFNSLENRIRRLTTAFVASG 732
ED II++V+P + CSL V S E CRFMYD+ ED+FN+L+NRI R A ASG
Sbjct: 177 NDEDTIIKKVRPLQGCSLTVHGSGFGLEPNCRFMYDKDEDRFNALDNRIMRHAKALAASG 236
Query: 733 LYEESVDPTMASQKSAFSVGMISCDGEGRLNEKSILLQGSVEQSGGQRVRLDLQKLTQYS 912
LYEE+VDPT+ASQKS F+VGMI CDGEG LN+KSILLQ S+ SGGQRVRL+LQ L+Q+S
Sbjct: 237 LYEEAVDPTVASQKSIFAVGMIYCDGEGHLNDKSILLQSSIAHSGGQRVRLELQNLSQFS 296
Query: 913 FFPGQVVGVEGHNPSGHCLVASKVFDSFPFSVSPDVEFPPAKKQAMDHEFQPDSPSSTPE 1092
FPGQVVG+EGHNPSGHCL+ASK+ DSFP S + D PPAKK A++H+ QP + SSTP
Sbjct: 297 IFPGQVVGIEGHNPSGHCLIASKLVDSFPLSATIDPILPPAKKIALNHDIQPINQSSTPS 356
Query: 1093 KLSLVIAAGPFTTTDNLLFEPLVELLAYATRKQPQLLMLLGPFIDFEHPEIRKGTIDRSF 1272
+LS++IA+GP+TTTDNLLFEPL ELLAYA RK PQLL+LLGPF+D EH +I++GT++ SF
Sbjct: 357 ELSMIIASGPYTTTDNLLFEPLTELLAYAKRKVPQLLILLGPFVDSEHSDIKRGTVEMSF 416
Query: 1273 DDIFHSDILRR 1305
++IF ++LRR
Sbjct: 417 EEIFKFEVLRR 427
>ref|XP_003537544.1| PREDICTED: DNA polymerase alpha subunit B-like [Glycine max]
Length = 605
Score = 495 bits (1274), Expect = e-137
Identities = 255/431 (59%), Positives = 325/431 (75%), Gaps = 2/431 (0%)
Frame = +1
Query: 19 MEQEIKAEFERSGFTLDQEEDILKKCLTFCINYKLSASDLVSSWEVYYLNRQLNGSVVQN 198
ME+EIK+EF+RSGF L+ E++IL KC+TFCINY L+ SDLVSSWEVYYLNRQLN VVQN
Sbjct: 1 MEEEIKSEFKRSGFGLEDEQEILSKCVTFCINYSLTPSDLVSSWEVYYLNRQLNEPVVQN 60
Query: 199 GHMDGFLLHLQNEQKESLIKE--EAHPHIYSSSDVDMILSEEHEENKEGTIGTPVDRKER 372
+DGFLLHLQNE+KE +IKE EA HIYS DV+MIL+ + ++ K+ T GTP++ +
Sbjct: 61 AEIDGFLLHLQNEKKEDVIKEKEEAGLHIYSIGDVEMILNND-DDTKDNTPGTPINHHQD 119
Query: 373 LYTETIDSMPGTNGIVPSSGKPSRLSTSHVTPFGQRTNKFVVQFTLNEFAKKENDSREQE 552
+ D+ V SSGKPS+ + VTPF +RT+KF V+F++N END
Sbjct: 120 PLSPAPDTPSLMYENVLSSGKPSK--SKLVTPFSKRTDKFAVKFSINTVPNVENDE---- 173
Query: 553 IVGHEDDIIRRVQPSERCSLEVQRSWPESGCRFMYDRIEDKFNSLENRIRRLTTAFVASG 732
+EDD++RRV ER SL + S P+ GCRF+YDR ED+ N++ENR+R+ T AFVASG
Sbjct: 174 ---NEDDVVRRVPLFERSSLSIHGSGPKPGCRFLYDRTEDRLNAIENRLRKHTRAFVASG 230
Query: 733 LYEESVDPTMASQKSAFSVGMISCDGEGRLNEKSILLQGSVEQSGGQRVRLDLQKLTQYS 912
L+EE DPT ASQ+S F+VGMI CDGEGRLNEKS++LQ S+E SGG+ VRLDLQ+L+ YS
Sbjct: 231 LHEEPTDPTTASQRSIFAVGMICCDGEGRLNEKSVMLQSSIEHSGGECVRLDLQRLSHYS 290
Query: 913 FFPGQVVGVEGHNPSGHCLVASKVFDSFPFSVSPDVEFPPAKKQAMDHEFQPDSPSSTPE 1092
FPGQ+VG+ GHNPSGHC VA+K+ DS P SV+ D + PAKKQA+D E QP
Sbjct: 291 IFPGQIVGIGGHNPSGHCFVATKLVDSIPTSVA-DEDSNPAKKQAVDKENQPTDLLCKQR 349
Query: 1093 KLSLVIAAGPFTTTDNLLFEPLVELLAYATRKQPQLLMLLGPFIDFEHPEIRKGTIDRSF 1272
KLS++IAAGPFTTTDNLLFEPL+ELL +A + PQLL+LLGPF+D EHP+I+KGT+D SF
Sbjct: 350 KLSMIIAAGPFTTTDNLLFEPLIELLKHAKLRPPQLLVLLGPFVDSEHPDIKKGTVDTSF 409
Query: 1273 DDIFHSDILRR 1305
D+IF +IL++
Sbjct: 410 DEIF-EEILKK 419
>ref|XP_003552790.1| PREDICTED: DNA polymerase alpha subunit B-like [Glycine max]
Length = 606
Score = 494 bits (1272), Expect = e-137
Identities = 249/431 (57%), Positives = 327/431 (75%), Gaps = 2/431 (0%)
Frame = +1
Query: 19 MEQEIKAEFERSGFTLDQEEDILKKCLTFCINYKLSASDLVSSWEVYYLNRQLNGSVVQN 198
ME++IK+EF+RSGF L+ E++IL KC+T+CINY L+ SDLVSSWEVYYLNRQLN +VQN
Sbjct: 1 MEEQIKSEFKRSGFGLEDEQEILSKCVTYCINYSLTPSDLVSSWEVYYLNRQLNEPIVQN 60
Query: 199 GHMDGFLLHLQNEQKESLIKE--EAHPHIYSSSDVDMILSEEHEENKEGTIGTPVDRKER 372
+DGFLLHLQNE+KE++IKE EA HIYS DV+MIL+ + ++ K+ T GTP++ +
Sbjct: 61 TEIDGFLLHLQNEKKETVIKEKEEAGLHIYSIGDVEMILNND-DDTKDNTPGTPINHHQD 119
Query: 373 LYTETIDSMPGTNGIVPSSGKPSRLSTSHVTPFGQRTNKFVVQFTLNEFAKKENDSREQE 552
+ +D+ V SSGKPS+ + +TPF +RT+KFVV+F++N K E +
Sbjct: 120 PLSPALDTTSLMYENVLSSGKPSK--SKLITPFSKRTDKFVVKFSINTVPKVEKAEND-- 175
Query: 553 IVGHEDDIIRRVQPSERCSLEVQRSWPESGCRFMYDRIEDKFNSLENRIRRLTTAFVASG 732
EDD++ RV ERCSL + RS P+ GCRF+YDR ED+ N++ENR+R+ T AFVASG
Sbjct: 176 ----EDDVLTRVPLHERCSLSIHRSGPKPGCRFLYDRTEDRLNAIENRLRKYTRAFVASG 231
Query: 733 LYEESVDPTMASQKSAFSVGMISCDGEGRLNEKSILLQGSVEQSGGQRVRLDLQKLTQYS 912
LYEE DPT ASQ+S F+VGMI CDGEGRLNEKS++LQ S+E SGG+ VRLDLQ+L+ YS
Sbjct: 232 LYEEPTDPTTASQRSIFAVGMICCDGEGRLNEKSVMLQSSIEHSGGECVRLDLQRLSHYS 291
Query: 913 FFPGQVVGVEGHNPSGHCLVASKVFDSFPFSVSPDVEFPPAKKQAMDHEFQPDSPSSTPE 1092
FPGQ+VG+ GHNPSGHC VA+K+ DS P ++ + + PAKKQA+D E QP
Sbjct: 292 IFPGQIVGIGGHNPSGHCFVATKLVDSIPTYIANE-DSNPAKKQAVDKENQPTDLLCKER 350
Query: 1093 KLSLVIAAGPFTTTDNLLFEPLVELLAYATRKQPQLLMLLGPFIDFEHPEIRKGTIDRSF 1272
+LS++IAAGPFTTTDNLLFEPL+ LL +A + PQLL+LLGPF+D EHP+I+KGT+DRSF
Sbjct: 351 ELSMIIAAGPFTTTDNLLFEPLIALLTHAKLRPPQLLVLLGPFVDSEHPDIKKGTVDRSF 410
Query: 1273 DDIFHSDILRR 1305
D+IF +IL++
Sbjct: 411 DEIF-EEILKK 420