BLASTX nr result
ID: Coptis21_contig00019915
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00019915
(847 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containi... 115 1e-41
ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containi... 113 2e-40
emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera] 113 2e-40
ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containi... 113 4e-40
emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera] 113 4e-40
>ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Vitis vinifera]
Length = 382
Score = 115 bits (288), Expect(3) = 1e-41
Identities = 55/98 (56%), Positives = 72/98 (73%)
Frame = -3
Query: 842 IVIQALCEMGNLDNALSLLDEMEGKGVKPNLFTFNVLMRAFYEDGRFLNSEMIWARMEKK 663
IVI LC+MG++D+A+ +LDEME K ++P+L TFN L+ Y GRFL+ E IW RMEKK
Sbjct: 170 IVINGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRMEKK 229
Query: 662 QIVPDIRSYNAKLRGLVVAGKIKEAVKLVESLKTKETK 549
I+PDIRSYNAKL GLV ++ E + LVE ++TK K
Sbjct: 230 NILPDIRSYNAKLVGLVSEKRMLEGIGLVEEMQTKGIK 267
Score = 71.2 bits (173), Expect(3) = 1e-41
Identities = 29/73 (39%), Positives = 49/73 (67%)
Frame = -2
Query: 438 SYNALIRGYCNDGKLDEAKRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLCEKS 259
S+NALI+G+CNDGK+DEA Y + +++ +P++ T+ L+P CEKG + A +LC++
Sbjct: 272 SFNALIKGFCNDGKVDEATNWYGKMRENDCLPDKLTFATLVPLYCEKGSFDQAFELCKEI 331
Query: 258 LENSCRIEAGLVQ 220
C ++ L+Q
Sbjct: 332 FNRKCLVDEVLLQ 344
Score = 30.4 bits (67), Expect(3) = 1e-41
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3
Query: 131 VEGLVKMSKVDEAKKLVSLARHKGYNK 51
V+GLVK KV EAKKLV L Y +
Sbjct: 347 VDGLVKGGKVVEAKKLVQLGNSNSYRR 373
>ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial [Vitis vinifera]
Length = 383
Score = 113 bits (282), Expect(3) = 2e-40
Identities = 56/99 (56%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Frame = -3
Query: 842 IVIQALCEMGNLDNALSLLDEMEGKGVKPNLFTFNVLMRAFYEDGRFLNSEMIWARMEKK 663
IVI+ LC+MG++D+A+ +LDEME K ++P+L TFN L+ Y GRFL+ E IW RMEKK
Sbjct: 170 IVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRMEKK 229
Query: 662 QIVPDIRSYNAKLRGLVVAGK-IKEAVKLVESLKTKETK 549
I+PDIRSYNAKL GLV + K + E + LVE ++TK K
Sbjct: 230 NILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIK 268
Score = 70.1 bits (170), Expect(3) = 2e-40
Identities = 29/73 (39%), Positives = 48/73 (65%)
Frame = -2
Query: 438 SYNALIRGYCNDGKLDEAKRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLCEKS 259
S+NALI+G+CNDGK+DEA Y + +++ P++ T+ L+P CEKG + A +LC++
Sbjct: 273 SFNALIKGFCNDGKVDEATNWYGKMRENDCSPDKLTFATLVPLYCEKGSFDQAFELCKEI 332
Query: 258 LENSCRIEAGLVQ 220
C ++ L+Q
Sbjct: 333 FNRKCLVDEVLLQ 345
Score = 30.4 bits (67), Expect(3) = 2e-40
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3
Query: 131 VEGLVKMSKVDEAKKLVSLARHKGYNK 51
V+GLVK KV EAKKLV L Y +
Sbjct: 348 VDGLVKGGKVVEAKKLVQLGNSNSYRR 374
>emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
Length = 383
Score = 113 bits (282), Expect(3) = 2e-40
Identities = 56/99 (56%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Frame = -3
Query: 842 IVIQALCEMGNLDNALSLLDEMEGKGVKPNLFTFNVLMRAFYEDGRFLNSEMIWARMEKK 663
IVI+ LC+MG++D+A+ +LDEME K ++P+L TFN L+ Y GRFL+ E IW RMEKK
Sbjct: 170 IVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNRXYTSGRFLDGEKIWGRMEKK 229
Query: 662 QIVPDIRSYNAKLRGLVVAGK-IKEAVKLVESLKTKETK 549
I+PDIRSYNAKL GLV + K + E + LVE ++TK K
Sbjct: 230 NILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIK 268
Score = 70.1 bits (170), Expect(3) = 2e-40
Identities = 29/73 (39%), Positives = 48/73 (65%)
Frame = -2
Query: 438 SYNALIRGYCNDGKLDEAKRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLCEKS 259
S+NALI+G+CNDGK+DEA Y + +++ P++ T+ L+P CEKG + A +LC++
Sbjct: 273 SFNALIKGFCNDGKVDEATNWYGKMRENDCSPDKLTFATLVPLYCEKGSFDQAFELCKEI 332
Query: 258 LENSCRIEAGLVQ 220
C ++ L+Q
Sbjct: 333 FNRKCLVDEVLLQ 345
Score = 30.4 bits (67), Expect(3) = 2e-40
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3
Query: 131 VEGLVKMSKVDEAKKLVSLARHKGYNK 51
V+GLVK KV EAKKLV L Y +
Sbjct: 348 VDGLVKGGKVVEAKKLVQLGNSNSYRR 374
>ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g13150-like [Vitis vinifera]
Length = 379
Score = 113 bits (283), Expect(3) = 4e-40
Identities = 49/98 (50%), Positives = 74/98 (75%)
Frame = -3
Query: 842 IVIQALCEMGNLDNALSLLDEMEGKGVKPNLFTFNVLMRAFYEDGRFLNSEMIWARMEKK 663
I++ A CEMG+LD+ALS+LDEME G++P+L TFN L+ AFY++G + + E IW M+K
Sbjct: 168 IIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKN 227
Query: 662 QIVPDIRSYNAKLRGLVVAGKIKEAVKLVESLKTKETK 549
+ P++RSYNAKLRG++ ++ EAV+L++ +KT K
Sbjct: 228 NVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIK 265
Score = 66.6 bits (161), Expect(3) = 4e-40
Identities = 31/76 (40%), Positives = 49/76 (64%)
Frame = -2
Query: 447 NTISYNALIRGYCNDGKLDEAKRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLC 268
+ + N+L++G+CN G L+EAKR Y ++ ++EL P R TY L+P + EKGD+ A +LC
Sbjct: 267 DVFTLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATYMTLIPFLVEKGDFDMATELC 326
Query: 267 EKSLENSCRIEAGLVQ 220
++ IE L+Q
Sbjct: 327 KEVCSRRWLIEPALLQ 342
Score = 32.0 bits (71), Expect(3) = 4e-40
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = -3
Query: 134 VVEGLVKMSKVDEAKKLVSLARHKGY 57
V+EGLVK SK++EA +LV LA+ K +
Sbjct: 344 VLEGLVKESKIEEATELVELAKLKKF 369
>emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]
Length = 340
Score = 113 bits (283), Expect(3) = 4e-40
Identities = 49/98 (50%), Positives = 74/98 (75%)
Frame = -3
Query: 842 IVIQALCEMGNLDNALSLLDEMEGKGVKPNLFTFNVLMRAFYEDGRFLNSEMIWARMEKK 663
I++ A CEMG+LD+ALS+LDEME G++P+L TFN L+ AFY++G + + E IW M+K
Sbjct: 129 IIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKN 188
Query: 662 QIVPDIRSYNAKLRGLVVAGKIKEAVKLVESLKTKETK 549
+ P++RSYNAKLRG++ ++ EAV+L++ +KT K
Sbjct: 189 NVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIK 226
Score = 66.6 bits (161), Expect(3) = 4e-40
Identities = 31/76 (40%), Positives = 49/76 (64%)
Frame = -2
Query: 447 NTISYNALIRGYCNDGKLDEAKRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLC 268
+ + N+L++G+CN G L+EAKR Y ++ ++EL P R TY L+P + EKGD+ A +LC
Sbjct: 228 DVFTLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATYMTLIPFLVEKGDFDMATELC 287
Query: 267 EKSLENSCRIEAGLVQ 220
++ IE L+Q
Sbjct: 288 KEVCSRRWLIEPALLQ 303
Score = 32.0 bits (71), Expect(3) = 4e-40
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = -3
Query: 134 VVEGLVKMSKVDEAKKLVSLARHKGY 57
V+EGLVK SK++EA +LV LA+ K +
Sbjct: 305 VLEGLVKESKIEEATELVELAKLKKF 330