BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00019908
         (677 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO00713.1| retrotransposon protein, putative, unclassified [...    61   2e-07
gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group...    61   2e-07
ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [S...    59   9e-07
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]              59   1e-06
gb|AAP54692.2| retrotransposon protein, putative, unclassified [...    57   3e-06

>gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1557

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
 Frame = -3

Query: 327 APS*SMRILAWNCRGVGLDSTIRCLKDQIRVERPNIVFLCETKSDVHKSTRILLPFDSAY 148
           APS +M  L+WNCRG+G  +T++ L   ++      VFLCET+  V K  R  L      
Sbjct: 429 APSGAMNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKR--LRNRLGL 486

Query: 147 KSFV-IGSRGLSGGLWCLWHHELDVQIVWSDSWIIHAAV 34
           + F  + S G+SGGL   WH  + V+I+  +   I A +
Sbjct: 487 RGFAGVSSDGMSGGLALFWHESVHVEILNKNERFIDAYI 525


>gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group]
           gi|54291856|gb|AAV32224.1| hypothetical protein [Oryza
           sativa Japonica Group]
          Length = 1936

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
 Frame = -3

Query: 315 SMRILAWNCRGVGLDSTIRCLKDQIRVERPNIVFLCETKSDVHKSTRILLPFDSAYKSFV 136
           +M  LAWNCRG+G  +T++ L+  I+     +VFLCET+  V K +R+      A++ FV
Sbjct: 635 AMSCLAWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKL--AFRGFV 692

Query: 135 -IGSRGLSGGLWCLWHHELDVQI 70
            + S G SGGL   W   + V +
Sbjct: 693 GVSSEGKSGGLALYWDESVSVDV 715


>ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [Sorghum bicolor]
           gi|241936261|gb|EES09406.1| hypothetical protein
           SORBIDRAFT_05g005061 [Sorghum bicolor]
          Length = 753

 Score = 58.9 bits (141), Expect = 9e-07
 Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
 Frame = -3

Query: 312 MRILAWNCRGVGLDSTIRCLKDQIRVERPNIVFLCETKSDVHK--STRILLPFDSAYKSF 139
           M+ L WNCRG+G  +T++ L+D  +   P+++F+ ET+   ++  + R  L FD+   SF
Sbjct: 1   MKTLCWNCRGIGNPATVKELRDLAKDYAPSVMFIMETQISKYRVENLRYTLSFDN---SF 57

Query: 138 VIGSRGLSGGLWCLWHHELDVQIVWSDSWIIHAAVND 28
            + S G SGGL   W++++ + I    ++ I   +++
Sbjct: 58  AVNSSGRSGGLGLFWNNDVLLSIQKYSNYHIDTIISE 94


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
 Frame = -3

Query: 363 SV*EGKGRWP*TAPS*S---MRILAWNCRGVGLDSTIRCLKDQIRVERPNIVFLCETKSD 193
           SV  G GRWP   P      MRIL+WNCRG+      R +KD +   + + + L E +S 
Sbjct: 514 SVTPGGGRWP-NPPFRGCFLMRILSWNCRGIANSRVRRFVKDLLSTTKADALCLLEIRSS 572

Query: 192 VHKSTRILLPFDSAYKSFVIGSRGLSGGLWCLWHHELDVQIVWSDSWIIHAAVNDMNGN 16
             +    L         F++   G +GGL  LW   L++ ++  +S  IH   +   GN
Sbjct: 573 KAEKMIALASRLGLTNHFIVNPLGFAGGLLLLWKPALNLSVISHNSQAIHTLASHRLGN 631


>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1585

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
 Frame = -3

Query: 315 SMRILAWNCRGVGLDSTIRCLKDQIRVERPNIVFLCETKSDVHKSTRILLPFDSAYKSFV 136
           +M  L+WNCRG+G  +T++ L   ++      VFLCET+  V K  R  L      + F 
Sbjct: 461 AMNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKR--LRNRLGLRGFA 518

Query: 135 -IGSRGLSGGLWCLWHHELDVQIVWSDSWIIHAAV 34
            + S G+SGGL   WH  + V+I+  +   I A +
Sbjct: 519 GVSSDGMSGGLALFWHESVHVEILNKNERFIDAYI 553