BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00019848
         (933 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II su...   239   5e-61
emb|CBI26363.3| unnamed protein product [Vitis vinifera]              238   2e-60
ref|NP_001238607.1| uncharacterized protein LOC100527862 [Glycin...   237   3e-60
ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypep...   237   3e-60
ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II su...   236   4e-60

>ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449522228|ref|XP_004168129.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
          Length = 175

 Score =  239 bits (611), Expect = 5e-61
 Identities = 114/175 (65%), Positives = 147/175 (84%)
 Frame = -2

Query: 758 MFLKAEMSWNVVIPPDNLDVKGLMLQRAILVRLMDDFASRKATSDHGYFVALTTVDKIGE 579
           MFLK ++ WNV+IP +NLD KGLMLQR+I++RL+D+FA++KAT D GYF+A+TT++ IGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 578 GKVRKECGGVLFPVVFNCITFKLSKGEILQGVVNSVSKAGVFLTCGPVEQIFVPAKTMPD 399
           GKVR + G VLFPV+F+ ITFKL +GEIL+GVV+ V K GVFL CGPVE I++    MPD
Sbjct: 61  GKVR-QTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 119

Query: 398 YQYVHGENPVFMNDRLLKIGKDVEVRFAVIGTKWVESERQFKAIGSLAGDFLGPI 234
           Y+YV GENPVF+ND+L KI KDV VRF VIGTKW+E+ER+F+A+ SL GD+LGP+
Sbjct: 120 YRYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPV 174


>emb|CBI26363.3| unnamed protein product [Vitis vinifera]
          Length = 242

 Score =  238 bits (607), Expect = 2e-60
 Identities = 115/198 (58%), Positives = 153/198 (77%)
 Frame = -2

Query: 827 SSPLLLSFFTEKALGSFG*QGANMFLKAEMSWNVVIPPDNLDVKGLMLQRAILVRLMDDF 648
           S PLL+ + TE            MFLK ++ WNV+IP + LD KGLMLQR+I++RL+D F
Sbjct: 55  SEPLLVRWKTE------------MFLKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAF 102

Query: 647 ASRKATSDHGYFVALTTVDKIGEGKVRKECGGVLFPVVFNCITFKLSKGEILQGVVNSVS 468
           +++KAT + GYF+A+TT++ IGEGKVR+  G VLFPVVF+C+TFKL +GEIL GVV+ V 
Sbjct: 103 SNKKATQELGYFLAVTTLENIGEGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVL 162

Query: 467 KAGVFLTCGPVEQIFVPAKTMPDYQYVHGENPVFMNDRLLKIGKDVEVRFAVIGTKWVES 288
           K GV L CGPVE I++  + MPDY+YV GENPVF+N++L KI KDV VRF V+GTKW+E+
Sbjct: 163 KHGVILRCGPVENIYLSCQKMPDYRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEA 222

Query: 287 ERQFKAIGSLAGDFLGPI 234
           ER+F+A+ SL GD+LGP+
Sbjct: 223 EREFQALVSLEGDYLGPL 240


>ref|NP_001238607.1| uncharacterized protein LOC100527862 [Glycine max]
           gi|255633396|gb|ACU17055.1| unknown [Glycine max]
          Length = 180

 Score =  237 bits (604), Expect = 3e-60
 Identities = 112/175 (64%), Positives = 142/175 (81%)
 Frame = -2

Query: 758 MFLKAEMSWNVVIPPDNLDVKGLMLQRAILVRLMDDFASRKATSDHGYFVALTTVDKIGE 579
           MFLK ++ WNV+I  +NL  +GLML RAI+VRL+ DFA +KAT D GYF+A+TT++KIGE
Sbjct: 1   MFLKVQLHWNVIIAAENLQPEGLMLHRAIIVRLLSDFAVKKATKDLGYFLAVTTLEKIGE 60

Query: 578 GKVRKECGGVLFPVVFNCITFKLSKGEILQGVVNSVSKAGVFLTCGPVEQIFVPAKTMPD 399
           GKVR+  G VLFPVVFN ITFK  KGEIL+GVV+ V K GVF+ CGP+E +++    MPD
Sbjct: 61  GKVRQHTGDVLFPVVFNVITFKFFKGEILEGVVHKVLKHGVFMRCGPIENVYLSNLKMPD 120

Query: 398 YQYVHGENPVFMNDRLLKIGKDVEVRFAVIGTKWVESERQFKAIGSLAGDFLGPI 234
           Y+YV GEN  FMND++ KIGKDV VRF+VIGTKW+E+ER+F+A+ SL GD+LGPI
Sbjct: 121 YRYVPGENACFMNDKMSKIGKDVTVRFSVIGTKWMEAEREFQALVSLEGDYLGPI 175


>ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
           [Ricinus communis] gi|223538083|gb|EEF39694.1|
           DNA-directed RNA polymerase II 19 kD polypeptide rpb7,
           putative [Ricinus communis]
          Length = 176

 Score =  237 bits (604), Expect = 3e-60
 Identities = 109/175 (62%), Positives = 144/175 (82%)
 Frame = -2

Query: 758 MFLKAEMSWNVVIPPDNLDVKGLMLQRAILVRLMDDFASRKATSDHGYFVALTTVDKIGE 579
           M+LK ++ WNV+I  ++LD KGLMLQR+I++RL++DFAS+KAT D GY++A+TT++ IGE
Sbjct: 1   MYLKVQLPWNVIISAEHLDAKGLMLQRSIIIRLLEDFASKKATKDLGYYLAVTTLESIGE 60

Query: 578 GKVRKECGGVLFPVVFNCITFKLSKGEILQGVVNSVSKAGVFLTCGPVEQIFVPAKTMPD 399
           GKVR+  G VLFPVVFN ITFK+ +GEIL+GVV+ V K GVF+ CGP+E I++    MPD
Sbjct: 61  GKVREHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFIRCGPIENIYLSCMKMPD 120

Query: 398 YQYVHGENPVFMNDRLLKIGKDVEVRFAVIGTKWVESERQFKAIGSLAGDFLGPI 234
           Y YV GENPVF+ND+  KI KDV VRF VIGTKW+E+ER+F+A+ SL GD+LGP+
Sbjct: 121 YHYVPGENPVFLNDKTSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPV 175


>ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
           vinifera] gi|147822056|emb|CAN61549.1| hypothetical
           protein VITISV_043525 [Vitis vinifera]
          Length = 177

 Score =  236 bits (603), Expect = 4e-60
 Identities = 109/175 (62%), Positives = 145/175 (82%)
 Frame = -2

Query: 758 MFLKAEMSWNVVIPPDNLDVKGLMLQRAILVRLMDDFASRKATSDHGYFVALTTVDKIGE 579
           MFLK ++ WNV+IP + LD KGLMLQR+I++RL+D F+++KAT + GYF+A+TT++ IGE
Sbjct: 1   MFLKVQLPWNVIIPAECLDAKGLMLQRSIIIRLLDAFSNKKATQELGYFLAVTTLENIGE 60

Query: 578 GKVRKECGGVLFPVVFNCITFKLSKGEILQGVVNSVSKAGVFLTCGPVEQIFVPAKTMPD 399
           GKVR+  G VLFPVVF+C+TFKL +GEIL GVV+ V K GV L CGPVE I++  + MPD
Sbjct: 61  GKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCGPVENIYLSCQKMPD 120

Query: 398 YQYVHGENPVFMNDRLLKIGKDVEVRFAVIGTKWVESERQFKAIGSLAGDFLGPI 234
           Y+YV GENPVF+N++L KI KDV VRF V+GTKW+E+ER+F+A+ SL GD+LGP+
Sbjct: 121 YRYVPGENPVFLNEKLSKIEKDVVVRFIVMGTKWLEAEREFQALVSLEGDYLGPL 175