BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00019840
         (451 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    57   2e-06

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
 Frame = +1

Query: 88  VKQTLELGWKHIWIESDSSSVVKVFQTGK-VHWRVKATWQVLQEQATWLNVTATW--RET 258
           +++++E   + IW+E+DS  VVK F + + V W+++  W      A  +    T   RE 
Sbjct: 64  IEKSIEYNLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREG 123

Query: 259 NSGADSCARHGVALLMRQKVWWDVRPPF 342
           N+GADS A++G +L +    WW   P F
Sbjct: 124 NAGADSLAKNGKSLALLTSQWWSSSPLF 151