BLASTX nr result
ID: Coptis21_contig00019799
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00019799
(1578 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ... 57 2e-24
gb|AAP53315.2| retrotransposon protein, putative, unclassified [... 57 2e-24
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo... 57 4e-24
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 57 5e-24
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 51 1e-23
>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1509
Score = 56.6 bits (135), Expect(4) = 2e-24
Identities = 32/90 (35%), Positives = 54/90 (60%)
Frame = +1
Query: 1117 GGLGFRKVKEMNQAMISKHCWRLLQEEESIWSKTFKSIYKWSGLEVVNKKRSASCSYFWR 1296
GGLGFR + N AM++K WRL+Q+ +S+ S+ ++ Y G + K++++ SY WR
Sbjct: 1052 GGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLG-DCFRPKQTSNVSYTWR 1110
Query: 1297 GINRTMDGMYNIRTRFIWKQERDGSTIDIY 1386
I + G+ ++ IW+ DGS I+I+
Sbjct: 1111 SIQK---GLRVLQNGMIWR-VGDGSKINIW 1136
Score = 48.1 bits (113), Expect(4) = 2e-24
Identities = 24/81 (29%), Positives = 44/81 (54%)
Frame = +2
Query: 713 KSSAFFSSIVHHRHQKMLTKIWRVRKFDERKKYLGVPLLLTRKKCENFDYLVDSLQRKAI 892
KS+ FS + + +++ +KYLG+P+ + R + + F YL + + ++
Sbjct: 919 KSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQ 978
Query: 893 GWKAKILSQAVRTTLVKIVGQ 955
GWK K+LS+A + L+K V Q
Sbjct: 979 GWKEKLLSRAGKEILIKAVAQ 999
Score = 38.5 bits (88), Expect(4) = 2e-24
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 957 VVPIYAMSTYLLLNKITDKLDQLNRNFWWNGTLDFNTNHTISWEKL 1094
V+P +AM + L + D++ ++ +WW+ N H +SW KL
Sbjct: 1000 VIPTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKL 1045
Score = 36.6 bits (83), Expect(4) = 2e-24
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +1
Query: 586 ISHLLFADDLIIFSEASLVEAVNMKRIVDLYCKASGQEVS 705
+SHLLFADD +I A+ EA ++ I+ +Y + SGQ ++
Sbjct: 877 VSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVIN 916
>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1505
Score = 56.6 bits (135), Expect(4) = 2e-24
Identities = 32/90 (35%), Positives = 54/90 (60%)
Frame = +1
Query: 1117 GGLGFRKVKEMNQAMISKHCWRLLQEEESIWSKTFKSIYKWSGLEVVNKKRSASCSYFWR 1296
GGLGFR + N AM++K WRL+Q+ +S+ S+ ++ Y G + K++++ SY WR
Sbjct: 1048 GGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLG-DCFRPKQTSNVSYTWR 1106
Query: 1297 GINRTMDGMYNIRTRFIWKQERDGSTIDIY 1386
I + G+ ++ IW+ DGS I+I+
Sbjct: 1107 SIQK---GLRVLQNGMIWR-VGDGSKINIW 1132
Score = 48.1 bits (113), Expect(4) = 2e-24
Identities = 24/81 (29%), Positives = 44/81 (54%)
Frame = +2
Query: 713 KSSAFFSSIVHHRHQKMLTKIWRVRKFDERKKYLGVPLLLTRKKCENFDYLVDSLQRKAI 892
KS+ FS + + +++ +KYLG+P+ + R + + F YL + + ++
Sbjct: 915 KSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQ 974
Query: 893 GWKAKILSQAVRTTLVKIVGQ 955
GWK K+LS+A + L+K V Q
Sbjct: 975 GWKEKLLSRAGKEILIKAVAQ 995
Score = 38.5 bits (88), Expect(4) = 2e-24
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 957 VVPIYAMSTYLLLNKITDKLDQLNRNFWWNGTLDFNTNHTISWEKL 1094
V+P +AM + L + D++ ++ +WW+ N H +SW KL
Sbjct: 996 VIPTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKL 1041
Score = 36.6 bits (83), Expect(4) = 2e-24
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +1
Query: 586 ISHLLFADDLIIFSEASLVEAVNMKRIVDLYCKASGQEVS 705
+SHLLFADD +I A+ EA ++ I+ +Y + SGQ ++
Sbjct: 873 VSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVIN 912
>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
Length = 1594
Score = 57.4 bits (137), Expect(4) = 4e-24
Identities = 32/90 (35%), Positives = 54/90 (60%)
Frame = +1
Query: 1117 GGLGFRKVKEMNQAMISKHCWRLLQEEESIWSKTFKSIYKWSGLEVVNKKRSASCSYFWR 1296
GGLGFR + N AM++K WRL+Q+ +S+ S+ ++ Y G + K++++ SY WR
Sbjct: 1080 GGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLG-DCFRPKQTSNVSYTWR 1138
Query: 1297 GINRTMDGMYNIRTRFIWKQERDGSTIDIY 1386
I + G+ ++ IW+ DGS I+I+
Sbjct: 1139 SIQK---GLRVLQNGMIWRM-GDGSKINIW 1164
Score = 48.1 bits (113), Expect(4) = 4e-24
Identities = 24/81 (29%), Positives = 44/81 (54%)
Frame = +2
Query: 713 KSSAFFSSIVHHRHQKMLTKIWRVRKFDERKKYLGVPLLLTRKKCENFDYLVDSLQRKAI 892
KS+ FS + + +++ +KYLG+P+ + R + + F YL + + ++
Sbjct: 947 KSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQ 1006
Query: 893 GWKAKILSQAVRTTLVKIVGQ 955
GWK K+LS+A + L+K V Q
Sbjct: 1007 GWKEKLLSRAGKEILIKAVAQ 1027
Score = 37.0 bits (84), Expect(4) = 4e-24
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 960 VPIYAMSTYLLLNKITDKLDQLNRNFWWNGTLDFNTNHTISWEKL 1094
+P +AM + L + D++ ++ +WW+ N H +SW KL
Sbjct: 1029 IPTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKL 1073
Score = 36.6 bits (83), Expect(4) = 4e-24
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +1
Query: 586 ISHLLFADDLIIFSEASLVEAVNMKRIVDLYCKASGQEVS 705
+SHLLFADD +I A+ EA ++ I+ +Y + SGQ ++
Sbjct: 905 VSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVIN 944
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 56.6 bits (135), Expect(4) = 5e-24
Identities = 32/90 (35%), Positives = 54/90 (60%)
Frame = +1
Query: 1117 GGLGFRKVKEMNQAMISKHCWRLLQEEESIWSKTFKSIYKWSGLEVVNKKRSASCSYFWR 1296
GGLGFR + N AM++K WRL+Q+ +S+ S+ ++ Y G + K++++ SY WR
Sbjct: 1107 GGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLG-DCFRPKQTSNVSYTWR 1165
Query: 1297 GINRTMDGMYNIRTRFIWKQERDGSTIDIY 1386
I + G+ ++ IW+ DGS I+I+
Sbjct: 1166 SIQK---GLRVLQNGMIWR-VGDGSKINIW 1191
Score = 48.5 bits (114), Expect(4) = 5e-24
Identities = 23/81 (28%), Positives = 45/81 (55%)
Frame = +2
Query: 713 KSSAFFSSIVHHRHQKMLTKIWRVRKFDERKKYLGVPLLLTRKKCENFDYLVDSLQRKAI 892
KS+ FS ++ + +++ ++YLG+P+ + R + + F YL + + ++
Sbjct: 974 KSAVMFSPNTSSLEKRAVMAALNMQRETTNERYLGLPVFVGRSRTKIFSYLKERIWQRIQ 1033
Query: 893 GWKAKILSQAVRTTLVKIVGQ 955
GWK K+LS+A + L+K V Q
Sbjct: 1034 GWKEKLLSRAGKEILIKAVAQ 1054
Score = 37.0 bits (84), Expect(4) = 5e-24
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 960 VPIYAMSTYLLLNKITDKLDQLNRNFWWNGTLDFNTNHTISWEKL 1094
+P +AM + L + D++ ++ +WW+ N H +SW KL
Sbjct: 1056 IPTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKL 1100
Score = 36.6 bits (83), Expect(4) = 5e-24
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +1
Query: 586 ISHLLFADDLIIFSEASLVEAVNMKRIVDLYCKASGQEVS 705
+SHLLFADD +I A+ EA ++ I+ +Y + SGQ ++
Sbjct: 932 VSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVIN 971
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 50.8 bits (120), Expect(4) = 1e-23
Identities = 20/47 (42%), Positives = 34/47 (72%)
Frame = +1
Query: 1096 ICKS*SAGGLGFRKVKEMNQAMISKHCWRLLQEEESIWSKTFKSIYK 1236
+C+ +AGGLG R K+MN+A+++K WRLL ++ S+W++ + YK
Sbjct: 642 VCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKYK 688
Score = 46.2 bits (108), Expect(4) = 1e-23
Identities = 27/79 (34%), Positives = 42/79 (53%)
Frame = +2
Query: 713 KSSAFFSSIVHHRHQKMLTKIWRVRKFDERKKYLGVPLLLTRKKCENFDYLVDSLQRKAI 892
KS FFS+ V + ++T + E KYLG+P+L R + F +++ + +
Sbjct: 516 KSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLERVSSRLS 575
Query: 893 GWKAKILSQAVRTTLVKIV 949
GWK++ LS A R TL K V
Sbjct: 576 GWKSRSLSLAGRITLTKAV 594
Score = 45.4 bits (106), Expect(4) = 1e-23
Identities = 17/45 (37%), Positives = 31/45 (68%)
Frame = +3
Query: 960 VPIYAMSTYLLLNKITDKLDQLNRNFWWNGTLDFNTNHTISWEKL 1094
+PI+ MS+ LL + ++LD+++RNF W T++ H +SW+K+
Sbjct: 598 IPIHTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKV 642
Score = 35.0 bits (79), Expect(4) = 1e-23
Identities = 13/26 (50%), Positives = 23/26 (88%)
Frame = +1
Query: 586 ISHLLFADDLIIFSEASLVEAVNMKR 663
+SH+ FADDLI+F+EAS+ + V++++
Sbjct: 491 VSHVCFADDLILFAEASVAQKVSLEK 516