BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00019782
         (305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACQ99757.1| RNA polymerase IV, partial [Heliosperma tommasinii]    149   2e-34
gb|ACQ99756.1| RNA polymerase IV, partial [Heliosperma oliverae]      149   2e-34
gb|ACQ99760.1| RNA polymerase IV, partial [Heliosperma macranthum]    149   3e-34
gb|ACQ99759.1| RNA polymerase IV, partial [Heliosperma macranthum]    149   3e-34
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   148   4e-34

>gb|ACQ99757.1| RNA polymerase IV, partial [Heliosperma tommasinii]
          Length = 362

 Score =  149 bits (377), Expect = 2e-34
 Identities = 76/102 (74%), Positives = 86/102 (84%), Gaps = 1/102 (0%)
 Frame = +2

Query: 2   LGKPEYPLGKNVH-PMSEIYNGQNAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHIRC 178
           LGKP++ LG+N   P SE +NGQNAIVAVNVH GYNQEDS+VMNRASLERGMFRTEHIR 
Sbjct: 115 LGKPDHTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRS 174

Query: 179 YKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDDGF 304
           YKAEV+NK+ LE +R K  D I FGK+ SK+GRVDSLDDDGF
Sbjct: 175 YKAEVDNKDSLENRR-KFDDAISFGKIQSKLGRVDSLDDDGF 215


>gb|ACQ99756.1| RNA polymerase IV, partial [Heliosperma oliverae]
          Length = 363

 Score =  149 bits (377), Expect = 2e-34
 Identities = 76/102 (74%), Positives = 86/102 (84%), Gaps = 1/102 (0%)
 Frame = +2

Query: 2   LGKPEYPLGKNVH-PMSEIYNGQNAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHIRC 178
           LGKP++ LG+N   P SE +NGQNAIVAVNVH GYNQEDS+VMNRASLERGMFRTEHIR 
Sbjct: 115 LGKPDHTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRS 174

Query: 179 YKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDDGF 304
           YKAEV+NK+ LE +R K  D I FGK+ SK+GRVDSLDDDGF
Sbjct: 175 YKAEVDNKDSLENRR-KFDDAISFGKIQSKLGRVDSLDDDGF 215


>gb|ACQ99760.1| RNA polymerase IV, partial [Heliosperma macranthum]
          Length = 479

 Score =  149 bits (375), Expect = 3e-34
 Identities = 76/102 (74%), Positives = 85/102 (83%), Gaps = 1/102 (0%)
 Frame = +2

Query: 2   LGKPEYPLGKNVH-PMSEIYNGQNAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHIRC 178
           LGK +Y LG+N   P SE +NGQNAIVAVNVH GYNQEDS+VMNRASLERGMFRTEHIR 
Sbjct: 227 LGKSDYTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRS 286

Query: 179 YKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDDGF 304
           YKAEV+NK+ LE KR K  D + FGK+ SK+GRVDSLDDDGF
Sbjct: 287 YKAEVDNKDSLE-KRRKFDDAVSFGKIQSKLGRVDSLDDDGF 327


>gb|ACQ99759.1| RNA polymerase IV, partial [Heliosperma macranthum]
          Length = 479

 Score =  149 bits (375), Expect = 3e-34
 Identities = 76/102 (74%), Positives = 85/102 (83%), Gaps = 1/102 (0%)
 Frame = +2

Query: 2   LGKPEYPLGKNVH-PMSEIYNGQNAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHIRC 178
           LGK +Y LG+N   P SE +NGQNAIVAVNVH GYNQEDS+VMNRASLERGMFRTEHIR 
Sbjct: 227 LGKSDYTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRS 286

Query: 179 YKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDDGF 304
           YKAEV+NK+ LE KR K  D + FGK+ SK+GRVDSLDDDGF
Sbjct: 287 YKAEVDNKDSLE-KRRKFDDAVSFGKIQSKLGRVDSLDDDGF 327


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score =  148 bits (374), Expect = 4e-34
 Identities = 76/102 (74%), Positives = 86/102 (84%), Gaps = 1/102 (0%)
 Frame = +2

Query: 2    LGKPEYPLGKN-VHPMSEIYNGQNAIVAVNVHQGYNQEDSLVMNRASLERGMFRTEHIRC 178
            LGKP    G N + P  E+YNGQNAIVAVNVH GYNQEDSLVMNRASLERGMFR+EHIR 
Sbjct: 789  LGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 848

Query: 179  YKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDDGF 304
            YKA+V+NKE+L+ KR K  D ++FGK+PSKIGRVDSLDDDGF
Sbjct: 849  YKADVDNKELLD-KRRKYDDNVNFGKIPSKIGRVDSLDDDGF 889