BLASTX nr result
ID: Coptis21_contig00019772
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00019772
(863 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004143010.1| PREDICTED: SKP1-like protein 1B-like [Cucumi... 125 2e-31
ref|XP_002510576.1| skp1, putative [Ricinus communis] gi|2235512... 125 3e-31
ref|XP_002531150.1| skp1, putative [Ricinus communis] gi|2235292... 125 4e-31
ref|NP_001241052.1| uncharacterized protein LOC100798104 [Glycin... 126 5e-31
gb|ACF06567.1| kinetochore protein [Elaeis guineensis] 121 6e-31
>ref|XP_004143010.1| PREDICTED: SKP1-like protein 1B-like [Cucumis sativus]
gi|449500366|ref|XP_004161077.1| PREDICTED: SKP1-like
protein 1B-like [Cucumis sativus]
Length = 157
Score = 125 bits (315), Expect(2) = 2e-31
Identities = 66/130 (50%), Positives = 85/130 (65%), Gaps = 3/130 (2%)
Frame = -1
Query: 539 RTIQHMLADNQSNEGILLPNITSNTLKKVIEYYEKHIESCKNNCLDGN---DFKDWELEF 369
+TI+HM+ D+ ++ GI LPN+ S L KVIEY +KH+ES K G+ D K W+ EF
Sbjct: 28 QTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEF 87
Query: 368 VKVDYQMLFALILATNELQFKQLYELSAGTVGKMMMGKTPQQIRKMFNITCDVDPVEEDK 189
VKVD LF LILA N L K L +L+ TV M+ GKTP++IRK FNI D P EE++
Sbjct: 88 VKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE 147
Query: 188 FVEENKWAFE 159
EN+WAFE
Sbjct: 148 VRRENQWAFE 157
Score = 36.6 bits (83), Expect(2) = 2e-31
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -3
Query: 609 KVILRSSDGDVFEVDEKICSESQT 538
K+ L+SSDG++FEVDE + ESQT
Sbjct: 6 KITLKSSDGEIFEVDEAVALESQT 29
>ref|XP_002510576.1| skp1, putative [Ricinus communis] gi|223551277|gb|EEF52763.1| skp1,
putative [Ricinus communis]
Length = 157
Score = 125 bits (314), Expect(2) = 3e-31
Identities = 64/130 (49%), Positives = 87/130 (66%), Gaps = 3/130 (2%)
Frame = -1
Query: 539 RTIQHMLADNQSNEGILLPNITSNTLKKVIEYYEKHIESCKNNCLDGN---DFKDWELEF 369
+TI+HM+ D+ ++ GI LPN+TS L KVIEY +KH+E+ K++ + + K W+ EF
Sbjct: 28 QTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVETSKSDDRPSSVDDELKTWDAEF 87
Query: 368 VKVDYQMLFALILATNELQFKQLYELSAGTVGKMMMGKTPQQIRKMFNITCDVDPVEEDK 189
VKVD LF LILA N L K L +L+ TV M+ GKTP++IRK FNI D P EE++
Sbjct: 88 VKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE 147
Query: 188 FVEENKWAFE 159
EN+WAFE
Sbjct: 148 VRRENQWAFE 157
Score = 36.6 bits (83), Expect(2) = 3e-31
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = -3
Query: 615 SSKVILRSSDGDVFEVDEKICSESQT 538
S K+ L+SSDG+ FEVDE + ESQT
Sbjct: 4 SRKITLKSSDGETFEVDEAVALESQT 29
>ref|XP_002531150.1| skp1, putative [Ricinus communis] gi|223529263|gb|EEF31235.1| skp1,
putative [Ricinus communis]
Length = 161
Score = 125 bits (314), Expect(2) = 4e-31
Identities = 66/135 (48%), Positives = 87/135 (64%), Gaps = 8/135 (5%)
Frame = -1
Query: 539 RTIQHMLADNQSNEGILLPNITSNTLKKVIEYYEKHIESCK--------NNCLDGNDFKD 384
+TI+HM+ D+ ++ GI LPN+TS L KVIEY +KH+E+ K NN ++ K
Sbjct: 27 QTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVETPKSSSEDRTINNSNTDDELKA 86
Query: 383 WELEFVKVDYQMLFALILATNELQFKQLYELSAGTVGKMMMGKTPQQIRKMFNITCDVDP 204
W+ EFVKVD LF LILA N L K L +L+ TV M+ GKTP++IRK FNI D P
Sbjct: 87 WDAEFVKVDQSTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP 146
Query: 203 VEEDKFVEENKWAFE 159
EE++ EN+WAFE
Sbjct: 147 EEEEEVRRENQWAFE 161
Score = 36.2 bits (82), Expect(2) = 4e-31
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = -3
Query: 621 VGSSKVILRSSDGDVFEVDEKICSESQT 538
+ S K+ L+SSDG+ FEVDE + ESQT
Sbjct: 1 MSSKKITLKSSDGEPFEVDEVVALESQT 28
>ref|NP_001241052.1| uncharacterized protein LOC100798104 [Glycine max]
gi|255641709|gb|ACU21125.1| unknown [Glycine max]
Length = 155
Score = 126 bits (317), Expect(2) = 5e-31
Identities = 66/131 (50%), Positives = 87/131 (66%), Gaps = 4/131 (3%)
Frame = -1
Query: 539 RTIQHMLADNQSNEGILLPNITSNTLKKVIEYYEKHIESCKNNCLDG----NDFKDWELE 372
+TI+HM+ DN ++ GI LPN+TS L KVIEY +KH+E+ NC D ++ K W+ +
Sbjct: 28 QTIKHMIEDNCADSGIPLPNVTSKILAKVIEYCKKHVEA---NCADEKPSEDELKAWDAD 84
Query: 371 FVKVDYQMLFALILATNELQFKQLYELSAGTVGKMMMGKTPQQIRKMFNITCDVDPVEED 192
FVKVD LF LILA N L K L +L+ TV M+ GKTP++IRK FNI D P EE+
Sbjct: 85 FVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEE 144
Query: 191 KFVEENKWAFE 159
+ EN+WAFE
Sbjct: 145 EVRRENQWAFE 155
Score = 34.7 bits (78), Expect(2) = 5e-31
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3
Query: 624 VVGSSKVILRSSDGDVFEVDEKICSESQT 538
+ + K+ L+SSDG+ FEV+E + ESQT
Sbjct: 1 MASTKKITLKSSDGEAFEVEEAVAVESQT 29
>gb|ACF06567.1| kinetochore protein [Elaeis guineensis]
Length = 164
Score = 121 bits (303), Expect(2) = 6e-31
Identities = 64/138 (46%), Positives = 86/138 (62%), Gaps = 11/138 (7%)
Frame = -1
Query: 539 RTIQHMLADNQSNEGILLPNITSNTLKKVIEYYEKHIESCK-----------NNCLDGND 393
+TI+HM+ D+ ++ GI LPN+TS L KVIEY +KH+++ ++ L D
Sbjct: 27 QTIKHMIEDDCASNGIPLPNVTSKILSKVIEYCKKHVDAAAAAASKSATDDTSSKLGEED 86
Query: 392 FKDWELEFVKVDYQMLFALILATNELQFKQLYELSAGTVGKMMMGKTPQQIRKMFNITCD 213
K W+ EFVKVD LF LILA N L K L +L+ TV M+ GKTP++IRK FNI D
Sbjct: 87 LKTWDAEFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKND 146
Query: 212 VDPVEEDKFVEENKWAFE 159
P EE++ EN+WAFE
Sbjct: 147 FTPEEEEEVRRENQWAFE 164
Score = 39.7 bits (91), Expect(2) = 6e-31
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = -3
Query: 621 VGSSKVILRSSDGDVFEVDEKICSESQT 538
+ K+IL+SSDG+VFEVDE + ESQT
Sbjct: 1 MAEKKIILKSSDGEVFEVDEMVAMESQT 28