BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00019722
         (255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   124   8e-27
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             124   1e-26
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   118   4e-25
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             113   1e-23
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...   112   3e-23

>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  124 bits (311), Expect = 8e-27
 Identities = 55/83 (66%), Positives = 72/83 (86%)
 Frame = -2

Query: 254  LNPTKCAFAVSSGKFLGFLVTKRGIEANPEQIRALIDMPSPQNMKEVQKVTGRLAALNRF 75
            LNP+KC F V+SG+FLG+LVT+RGIEANP+QI A+ID+PSP+N +EVQ++ GR+AALNRF
Sbjct: 967  LNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQRLIGRIAALNRF 1026

Query: 74   ISKSSEKCRPLFQLLRKNTLFAW 6
            IS+S++KC P +QLLR N  F W
Sbjct: 1027 ISRSTDKCLPFYQLLRANKRFEW 1049


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  124 bits (310), Expect = 1e-26
 Identities = 53/83 (63%), Positives = 73/83 (87%)
 Frame = -2

Query: 254  LNPTKCAFAVSSGKFLGFLVTKRGIEANPEQIRALIDMPSPQNMKEVQKVTGRLAALNRF 75
            LNPTKC F V+SG+FLG++VTKRGIEANP+QIRA++++PSP+N +EVQ++TGR+AALNRF
Sbjct: 1009 LNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRF 1068

Query: 74   ISKSSEKCRPLFQLLRKNTLFAW 6
            IS+S++KC P + LL++   F W
Sbjct: 1069 ISRSTDKCLPFYNLLKRRAQFDW 1091


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  118 bits (296), Expect = 4e-25
 Identities = 53/83 (63%), Positives = 68/83 (81%)
 Frame = -2

Query: 254 LNPTKCAFAVSSGKFLGFLVTKRGIEANPEQIRALIDMPSPQNMKEVQKVTGRLAALNRF 75
           LNP KC F V SG+FLG++VTKRGIEANP QI A ++MPSP+N KEVQ++TGR+AALNRF
Sbjct: 649 LNPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRF 708

Query: 74  ISKSSEKCRPLFQLLRKNTLFAW 6
           IS+S++K  P +Q+L+ N  F W
Sbjct: 709 ISRSTDKSLPFYQILKGNKEFLW 731


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  113 bits (283), Expect = 1e-23
 Identities = 51/83 (61%), Positives = 67/83 (80%)
 Frame = -2

Query: 254 LNPTKCAFAVSSGKFLGFLVTKRGIEANPEQIRALIDMPSPQNMKEVQKVTGRLAALNRF 75
           LNP KC F V SG+FLG++VT+RGIEAN  QI A ++MPSP+N KEVQ++TGR+AALNRF
Sbjct: 206 LNPAKCTFGVPSGEFLGYIVTERGIEANSNQINAFLNMPSPRNFKEVQRLTGRIAALNRF 265

Query: 74  ISKSSEKCRPLFQLLRKNTLFAW 6
           IS+S++K  P +Q+L+ N  F W
Sbjct: 266 ISRSTDKSLPFYQILKGNKGFLW 288


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score =  112 bits (280), Expect = 3e-23
 Identities = 50/76 (65%), Positives = 67/76 (88%)
 Frame = -2

Query: 254 LNPTKCAFAVSSGKFLGFLVTKRGIEANPEQIRALIDMPSPQNMKEVQKVTGRLAALNRF 75
           LNP KC F V+SG+FLG++VTKRGIEANP+QIRA++D+ SP+N KEVQ++TGR+A LNRF
Sbjct: 682 LNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRAILDLQSPRNKKEVQRLTGRIAGLNRF 741

Query: 74  ISKSSEKCRPLFQLLR 27
           I++S++K  P +QLLR
Sbjct: 742 IARSTDKSLPFYQLLR 757