BLASTX nr result
ID: Coptis21_contig00019721
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00019721
(878 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group] g... 89 2e-29
ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [S... 89 2e-29
dbj|BAJ53205.1| JHL06B08.6 [Jatropha curcas] 85 3e-29
ref|XP_002534470.1| transcription initiation factor iib, putativ... 85 3e-29
ref|XP_004150610.1| PREDICTED: transcription initiation factor I... 86 3e-29
>ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName:
Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|18481632|gb|AAL73491.1|AF464908_1 general
transcription factor TFIIB [Oryza sativa]
gi|50725809|dbj|BAD33339.1| Transcription initiation
factor IIB [Oryza sativa Japonica Group]
gi|50726577|dbj|BAD34211.1| Transcription initiation
factor IIB [Oryza sativa Japonica Group]
gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa
Japonica Group] gi|125564497|gb|EAZ09877.1| hypothetical
protein OsI_32170 [Oryza sativa Indica Group]
gi|125606444|gb|EAZ45480.1| hypothetical protein
OsJ_30135 [Oryza sativa Japonica Group]
gi|347737122|gb|AEP20532.1| transcription factor [Oryza
sativa Japonica Group]
Length = 312
Score = 89.0 bits (219), Expect(2) = 2e-29
Identities = 47/68 (69%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Frame = -2
Query: 370 EIHSIANGATKKEIGMNKFFIEKQLK-EIGESMETGATDAGDFMRHFCSRLNMNHQAIKA 194
EI S+ANGATKKEIG K FI KQL+ E+G+SME G AGDF+R FCS L MN+QA+KA
Sbjct: 170 EICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKA 229
Query: 193 AQEAVQNS 170
AQEAVQ S
Sbjct: 230 AQEAVQRS 237
Score = 67.4 bits (163), Expect(2) = 2e-29
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = -1
Query: 593 DQVNEIYKKVVDRKSTRGRNRDAFLAACLFVACQQEHKPHTVK 465
D+ NEIYKKV D KS RGRN+DA LAACL++AC+QE +P TVK
Sbjct: 127 DRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVK 169
>ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
gi|241923949|gb|EER97093.1| hypothetical protein
SORBIDRAFT_02g031020 [Sorghum bicolor]
Length = 312
Score = 89.0 bits (219), Expect(2) = 2e-29
Identities = 47/68 (69%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Frame = -2
Query: 370 EIHSIANGATKKEIGMNKFFIEKQLK-EIGESMETGATDAGDFMRHFCSRLNMNHQAIKA 194
EI S+ANGATKKEIG K FI KQL+ E+G+SME G AGDF+R FCS L MN+QA+KA
Sbjct: 170 EICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKA 229
Query: 193 AQEAVQNS 170
AQEAVQ S
Sbjct: 230 AQEAVQRS 237
Score = 67.4 bits (163), Expect(2) = 2e-29
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = -1
Query: 593 DQVNEIYKKVVDRKSTRGRNRDAFLAACLFVACQQEHKPHTVK 465
D+ NEIYKKV D KS RGRN+DA LAACL++AC+QE +P TVK
Sbjct: 127 DRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVK 169
>dbj|BAJ53205.1| JHL06B08.6 [Jatropha curcas]
Length = 312
Score = 85.1 bits (209), Expect(2) = 3e-29
Identities = 46/68 (67%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Frame = -2
Query: 370 EIHSIANGATKKEIGMNKFFIEKQLK-EIGESMETGATDAGDFMRHFCSRLNMNHQAIKA 194
EI S+ANGATKKEIG K +I KQL E G+S+E G AGDFMR FCS L MN+QA+KA
Sbjct: 170 EICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAMKA 229
Query: 193 AQEAVQNS 170
AQEAVQ S
Sbjct: 230 AQEAVQKS 237
Score = 70.5 bits (171), Expect(2) = 3e-29
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = -1
Query: 593 DQVNEIYKKVVDRKSTRGRNRDAFLAACLFVACQQEHKPHTVK 465
D+ NEIYKKV D+KS+RGRN+DA LAACL++AC+QE KP TVK
Sbjct: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
>ref|XP_002534470.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223525233|gb|EEF27913.1| transcription initiation
factor iib, putative [Ricinus communis]
Length = 312
Score = 85.1 bits (209), Expect(2) = 3e-29
Identities = 46/68 (67%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Frame = -2
Query: 370 EIHSIANGATKKEIGMNKFFIEKQLK-EIGESMETGATDAGDFMRHFCSRLNMNHQAIKA 194
EI S+ANGATKKEIG K +I KQL E G+S+E G AGDFMR FCS L MN+QA+KA
Sbjct: 170 EICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAMKA 229
Query: 193 AQEAVQNS 170
AQEAVQ S
Sbjct: 230 AQEAVQKS 237
Score = 70.5 bits (171), Expect(2) = 3e-29
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = -1
Query: 593 DQVNEIYKKVVDRKSTRGRNRDAFLAACLFVACQQEHKPHTVK 465
D+ NEIYKKV D+KS+RGRN+DA LAACL++AC+QE KP TVK
Sbjct: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
>ref|XP_004150610.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus] gi|449529834|ref|XP_004171903.1| PREDICTED:
transcription initiation factor IIB-2-like [Cucumis
sativus]
Length = 312
Score = 85.9 bits (211), Expect(2) = 3e-29
Identities = 46/68 (67%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Frame = -2
Query: 370 EIHSIANGATKKEIGMNKFFIEKQLK-EIGESMETGATDAGDFMRHFCSRLNMNHQAIKA 194
EI S+ANGATKKEIG K +I KQL E G+S+E G AGDFMR FCS L MN+QA+KA
Sbjct: 170 EICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
Query: 193 AQEAVQNS 170
AQEAVQ S
Sbjct: 230 AQEAVQKS 237
Score = 69.3 bits (168), Expect(2) = 3e-29
Identities = 30/43 (69%), Positives = 38/43 (88%)
Frame = -1
Query: 593 DQVNEIYKKVVDRKSTRGRNRDAFLAACLFVACQQEHKPHTVK 465
D+ NEIYK+V D+KS+RGRN+DA LAACL++AC+QE KP TVK
Sbjct: 127 DRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169