BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00019699
         (488 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270546.2| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   199   2e-49
ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|2...   190   9e-47
ref|XP_002514778.1| pentatricopeptide repeat-containing protein,...   176   2e-42
ref|XP_003546486.1| PREDICTED: pentatricopeptide repeat-containi...   169   3e-40
ref|XP_003542095.1| PREDICTED: pentatricopeptide repeat-containi...   165   4e-39

>ref|XP_002270546.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g02650, mitochondrial-like [Vitis vinifera]
          Length = 509

 Score =  199 bits (506), Expect = 2e-49
 Identities = 98/161 (60%), Positives = 123/161 (76%)
 Frame = +3

Query: 3   RVVDSLVRAFGTGGSDIRKKDVYALWDLVNEIGENDVGVLSTGILIEVISLFWKWGQGEA 182
           R VD+LVRA       +R+KD Y+LWDLV EIGE + GVL+ GIL E+I+ F K G+G+A
Sbjct: 185 RAVDALVRAVC---QSVRRKDTYSLWDLVKEIGEKENGVLNVGILNELIAQFAKLGKGKA 241

Query: 183 ALEVLNKFEDFVCEPNPDSYYLTIEALCGCSFYNWAWCVCEEMLNAGALPDSKKIGSIIS 362
            LEV N F ++ CEPN DSYY TIEALC  S ++WA  VCE+MLNA +LPDS+K+ +IIS
Sbjct: 242 GLEVFNAFGEYGCEPNADSYYFTIEALCRRSIFDWALSVCEKMLNASSLPDSEKVWNIIS 301

Query: 363 SFCKGNKAKGAHLVYLMAKERNKCPPRTVVNFLICSLCKKD 485
            FCKG K K A+LVYL+AKE+NK PP+T VNFLI SLC++D
Sbjct: 302 WFCKGRKVKDAYLVYLLAKEKNKYPPKTTVNFLIASLCRED 342


>ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|222847615|gb|EEE85162.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score =  190 bits (483), Expect = 9e-47
 Identities = 92/161 (57%), Positives = 123/161 (76%)
 Frame = +3

Query: 3   RVVDSLVRAFGTGGSDIRKKDVYALWDLVNEIGENDVGVLSTGILIEVISLFWKWGQGEA 182
           R +D LV +  +  S++R+K+ YALWDLV EIGE + G++S G L ++I+L  K G+G+A
Sbjct: 95  RAIDVLVSSICS--SELRRKNAYALWDLVREIGEKNEGLVSVGSLNQLIALLSKLGKGKA 152

Query: 183 ALEVLNKFEDFVCEPNPDSYYLTIEALCGCSFYNWAWCVCEEMLNAGALPDSKKIGSIIS 362
           ALEV +K +DF C P+ ++YY TIEALC  SFY+WAW VCE+ML+ G LPDS+KIG II 
Sbjct: 153 ALEVFDKSKDFGCVPDSETYYYTIEALCRRSFYDWAWIVCEKMLDQGPLPDSEKIGKIIC 212

Query: 363 SFCKGNKAKGAHLVYLMAKERNKCPPRTVVNFLICSLCKKD 485
            FCKG+KAK AH VYL+AKE++KCPP+  + FLI SLC+ D
Sbjct: 213 WFCKGSKAKDAHKVYLLAKEKSKCPPKPALYFLIGSLCRDD 253


>ref|XP_002514778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545829|gb|EEF47332.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 584

 Score =  176 bits (445), Expect = 2e-42
 Identities = 91/162 (56%), Positives = 120/162 (74%)
 Frame = +3

Query: 3   RVVDSLVRAFGTGGSDIRKKDVYALWDLVNEIGENDVGVLSTGILIEVISLFWKWGQGEA 182
           R+V  LVRA     S++RKKD YALWDLV +IGE +  VL+  +L ++I+LF K G+G+A
Sbjct: 204 RLVHPLVRAIC---SELRKKDAYALWDLVKDIGEEENTVLNVDLLNQLIALFSKLGKGKA 260

Query: 183 ALEVLNKFEDFVCEPNPDSYYLTIEALCGCSFYNWAWCVCEEMLNAGALPDSKKIGSIIS 362
           A EV NKF DF C P+ ++Y+ TIEALC  S ++WA  V E+ML A ALPD++KIG II 
Sbjct: 261 AFEVFNKFGDFGCVPDSETYHYTIEALCRRSIFDWASSVREKMLRAEALPDTEKIGKIIC 320

Query: 363 SFCKGNKAKGAHLVYLMAKERNKCPPRTVVNFLICSLCKKDD 488
            FCKG+KA  A+LVYL+AKE+NK PP+  VNFLI  LC+K++
Sbjct: 321 WFCKGDKANDAYLVYLLAKEKNKYPPQPSVNFLIGLLCQKNE 362


>ref|XP_003546486.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like isoform 1 [Glycine max]
           gi|356556346|ref|XP_003546487.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 538

 Score =  169 bits (427), Expect = 3e-40
 Identities = 87/162 (53%), Positives = 118/162 (72%), Gaps = 1/162 (0%)
 Frame = +3

Query: 6   VVDSLVRAFGTGGSDIRKKDV-YALWDLVNEIGENDVGVLSTGILIEVISLFWKWGQGEA 182
           +V+SLV A    G+D+RKK+V Y+LWDLV EIGE + G+L+  IL E+IS F + G+G+A
Sbjct: 156 MVESLVLAIC--GNDVRKKEVVYSLWDLVKEIGEKESGILNVKILNELISSFLRLGKGKA 213

Query: 183 ALEVLNKFEDFVCEPNPDSYYLTIEALCGCSFYNWAWCVCEEMLNAGALPDSKKIGSIIS 362
           ALEV NKFE F C P+ D+YY TIEALC     +WA  VC++M++A  LPD +K+G+I+S
Sbjct: 214 ALEVFNKFEAFHCVPDADTYYFTIEALCRRRALDWACGVCQKMVDAQILPDGEKVGAILS 273

Query: 363 SFCKGNKAKGAHLVYLMAKERNKCPPRTVVNFLICSLCKKDD 488
             CKG KAK AH VY++A E+ K PP  VV+FL+  LC +D+
Sbjct: 274 WLCKGKKAKEAHGVYVVATEKGKQPPVNVVSFLVVKLCGEDE 315


>ref|XP_003542095.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like [Glycine max]
          Length = 539

 Score =  165 bits (417), Expect = 4e-39
 Identities = 85/163 (52%), Positives = 117/163 (71%), Gaps = 2/163 (1%)
 Frame = +3

Query: 6   VVDSLVRAFGTGGSDIRKKD--VYALWDLVNEIGENDVGVLSTGILIEVISLFWKWGQGE 179
           +V+SLV A   G  D+RKK   VY+LWDLV EIGE + G+L+  IL E+IS F +  +G+
Sbjct: 155 MVESLVLAI-CGNDDVRKKKEVVYSLWDLVKEIGEKESGLLNVRILNELISSFSRLRKGK 213

Query: 180 AALEVLNKFEDFVCEPNPDSYYLTIEALCGCSFYNWAWCVCEEMLNAGALPDSKKIGSII 359
           AALEV +KFE F C P+ D+YY TIEALC    ++WA  VC++M++A  LPD++K+G+I+
Sbjct: 214 AALEVFDKFEAFHCVPDADTYYFTIEALCRRRAFDWACGVCQKMVDARTLPDAEKVGAIL 273

Query: 360 SSFCKGNKAKGAHLVYLMAKERNKCPPRTVVNFLICSLCKKDD 488
           S  CKG KAK AH VY++A E+ K PP  VV+FL+  LC +D+
Sbjct: 274 SWLCKGKKAKEAHGVYVVATEKGKLPPVNVVSFLVLKLCGEDE 316