BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00019572
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306200.1| predicted protein [Populus trichocarpa] gi|2...    81   8e-14
ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containi...    72   5e-11
ref|XP_002521253.1| pentatricopeptide repeat-containing protein,...    70   1e-10
ref|NP_195239.1| pentatricopeptide repeat-containing protein [Ar...    62   5e-08
gb|ABE77204.1| unknown [Sorghum bicolor]                               58   7e-07

>ref|XP_002306200.1| predicted protein [Populus trichocarpa] gi|222849164|gb|EEE86711.1|
           predicted protein [Populus trichocarpa]
          Length = 784

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 42/88 (47%), Positives = 55/88 (62%)
 Frame = +2

Query: 2   KTTGYSSVEVNSKAISFVDGDKSHEGTNLIYNVLDIIAGQIGEDIYDLSIXXXXXXXXXX 181
           KT G S V++N ++ SF++ D+SH  TNLIY+VLDI+  +IGEDIY  S+          
Sbjct: 648 KTVGCSMVDINGRSESFINQDRSHAHTNLIYDVLDILLKKIGEDIYLHSLTKFRPLDVAK 707

Query: 182 XXXXXXXYHSVRLAISFSLISTTVGRPV 265
                  YHSV+LAI F LIST +G PV
Sbjct: 708 KRGNSPEYHSVKLAICFGLISTAIGNPV 735


>ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
           gi|297744563|emb|CBI37825.3| unnamed protein product
           [Vitis vinifera]
          Length = 802

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 38/88 (43%), Positives = 53/88 (60%)
 Frame = +2

Query: 2   KTTGYSSVEVNSKAISFVDGDKSHEGTNLIYNVLDIIAGQIGEDIYDLSIXXXXXXXXXX 181
           K+ G S V+++SK   FV+ D+S    N++Y+VLDII+ +IGED+Y  S+          
Sbjct: 666 KSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLDIISKKIGEDVYVHSLTKFRPSDLEK 725

Query: 182 XXXXXXXYHSVRLAISFSLISTTVGRPV 265
                   HS+RLAI F LISTT+G PV
Sbjct: 726 KRANSAKSHSLRLAICFGLISTTIGNPV 753


>ref|XP_002521253.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539521|gb|EEF41109.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 484

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 38/88 (43%), Positives = 49/88 (55%)
 Frame = +2

Query: 2   KTTGYSSVEVNSKAISFVDGDKSHEGTNLIYNVLDIIAGQIGEDIYDLSIXXXXXXXXXX 181
           KT     VE N K+  F++ DKSH   N+IY+VLDII  +IG+D Y  S+          
Sbjct: 348 KTVSCCMVETNGKSHKFINQDKSHSQINMIYDVLDIIMKKIGKDAYVHSVSKFRLVDLMN 407

Query: 182 XXXXXXXYHSVRLAISFSLISTTVGRPV 265
                   HSV+LAI F LIST +G+PV
Sbjct: 408 KRKNSPANHSVKLAICFGLISTAIGKPV 435


>ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75098809|sp|O49619.1|PP350_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
           gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis
           thaliana] gi|7270464|emb|CAB80230.1| putative protein
           [Arabidopsis thaliana] gi|332661071|gb|AEE86471.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 804

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
 Frame = +2

Query: 2   KTTGYSSVEVNSKAISFVDGDKSHEGTNLIYNVLDIIAGQIG-EDIYDLSIXXXXXXXXX 178
           +T+  S+VE   K+  F +GD+SH  TN IY VLD+++  +G EDIY   +         
Sbjct: 667 RTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYVHCVSRLRPETLV 726

Query: 179 XXXXXXXXYHSVRLAISFSLISTTVGRPV 265
                    HSVRLA  F LIST  GR V
Sbjct: 727 KSRSNSPRRHSVRLATCFGLISTETGRRV 755


>gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 35/88 (39%), Positives = 47/88 (53%)
 Frame = +2

Query: 2   KTTGYSSVEVNSKAISFVDGDKSHEGTNLIYNVLDIIAGQIGEDIYDLSIXXXXXXXXXX 181
           +T   S VE+N+K  SFV+GD SH  +  I+   DI++  IGED+ D S           
Sbjct: 660 RTEARSLVELNNKECSFVNGDMSHPQSEKIHEFSDILSRNIGEDL-DSSSNLRDSDPFAS 718

Query: 182 XXXXXXXYHSVRLAISFSLISTTVGRPV 265
                   HSVRLA++F LIS+  G PV
Sbjct: 719 STTVLPNKHSVRLAVAFGLISSEAGSPV 746