BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00019510
         (1018 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306146.1| predicted protein [Populus trichocarpa] gi|2...   265   1e-68
ref|XP_002270280.1| PREDICTED: probable ribosome-binding factor ...   262   9e-68
ref|XP_004151338.1| PREDICTED: probable ribosome-binding factor ...   262   1e-67
ref|XP_002513014.1| Ribosome-binding factor A, putative [Ricinus...   262   1e-67
ref|NP_195199.2| ribosome-binding factor A [Arabidopsis thaliana...   257   4e-66

>ref|XP_002306146.1| predicted protein [Populus trichocarpa] gi|222849110|gb|EEE86657.1|
           predicted protein [Populus trichocarpa]
          Length = 166

 Score =  265 bits (677), Expect = 1e-68
 Identities = 139/166 (83%), Positives = 152/166 (91%)
 Frame = -2

Query: 792 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVQVSADLQ 613
           MANPRRVKMVAKQIQRELSDMLLTDKVLQ+AVLPEAALGAD+YLSSLTTISDV+VSADLQ
Sbjct: 1   MANPRRVKMVAKQIQRELSDMLLTDKVLQYAVLPEAALGADKYLSSLTTISDVEVSADLQ 60

Query: 612 VVKVYVSVFGDERGKELAIAGLKSKAKYVRGELGRRIKLRLTPEIRFIEDESLERGSRVI 433
           VVKVYVSVFGD+RGKE+AIAGLKSKAKYVR +LGRR+KLRLTPEIRFIEDE LERGSRVI
Sbjct: 61  VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDEGLERGSRVI 120

Query: 432 AILDRLKDEKNPAEDQDRDEVEDESSENRDDGDWQADDPDEDIIYV 295
           AILDR+K EK+ AE Q  DE+ D S+  + D DW+ DDPDEDIIYV
Sbjct: 121 AILDRIKAEKDNAESQ-VDELSDSSNSIQYDEDWEGDDPDEDIIYV 165


>ref|XP_002270280.1| PREDICTED: probable ribosome-binding factor A, chloroplastic
           isoform 1 [Vitis vinifera]
          Length = 223

 Score =  262 bits (670), Expect = 9e-68
 Identities = 139/171 (81%), Positives = 153/171 (89%), Gaps = 2/171 (1%)
 Frame = -2

Query: 801 IRCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVQVSA 622
           +RCMAN RRVKMVAKQI+RELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDV+VSA
Sbjct: 55  VRCMANQRRVKMVAKQIRRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 114

Query: 621 DLQVVKVYVSVFGDERGKELAIAGLKSKAKYVRGELGRRIKLRLTPEIRFIEDESLERGS 442
           DLQVVKVYVSVFGDE+GKE+AIAGLKSKAKYVR ELGRR+KLRLTPEIRF+EDESLERGS
Sbjct: 115 DLQVVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMKLRLTPEIRFVEDESLERGS 174

Query: 441 RVIAILDRLKDEKNPAEDQDRDEVEDESSENRDDGDWQ--ADDPDEDIIYV 295
           RVIAILDR+K+EK  A  QD+     ESS+   D DW+   DDPDE+IIY+
Sbjct: 175 RVIAILDRIKNEKKMAGSQDQ---PSESSDLPQDDDWEGDGDDPDENIIYI 222


>ref|XP_004151338.1| PREDICTED: probable ribosome-binding factor A, chloroplastic-like
           [Cucumis sativus] gi|449529960|ref|XP_004171965.1|
           PREDICTED: probable ribosome-binding factor A,
           chloroplastic-like [Cucumis sativus]
          Length = 225

 Score =  262 bits (669), Expect = 1e-67
 Identities = 142/196 (72%), Positives = 162/196 (82%)
 Frame = -2

Query: 882 LYKKSTVVLTPYKPLNLLGAPGNNKRIIRCMANPRRVKMVAKQIQRELSDMLLTDKVLQF 703
           +Y  ++V L P  P+ + GA       IRCMAN RR+KMVAKQIQRELSDMLLTDKVLQF
Sbjct: 37  VYSPTSVTLLPPPPV-MRGAT------IRCMANSRRIKMVAKQIQRELSDMLLTDKVLQF 89

Query: 702 AVLPEAALGADRYLSSLTTISDVQVSADLQVVKVYVSVFGDERGKELAIAGLKSKAKYVR 523
           A+LPEA+LGAD+YLSSLTTI+DV+VSADLQVVKVYVSVFGDERGK++AIAGLKSKAKYVR
Sbjct: 90  AILPEASLGADKYLSSLTTITDVEVSADLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVR 149

Query: 522 GELGRRIKLRLTPEIRFIEDESLERGSRVIAILDRLKDEKNPAEDQDRDEVEDESSENRD 343
             LG+R+KLRLTPEIRFIEDES ERGSRVIAILDR+KD+K    D+D D+ E  S    D
Sbjct: 150 SVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDKKKDTVDEDFDQPE-LSDALDD 208

Query: 342 DGDWQADDPDEDIIYV 295
           D DW+ DD DEDIIYV
Sbjct: 209 DRDWKGDDADEDIIYV 224


>ref|XP_002513014.1| Ribosome-binding factor A, putative [Ricinus communis]
           gi|223548025|gb|EEF49517.1| Ribosome-binding factor A,
           putative [Ricinus communis]
          Length = 221

 Score =  262 bits (669), Expect = 1e-67
 Identities = 140/207 (67%), Positives = 163/207 (78%), Gaps = 3/207 (1%)
 Frame = -2

Query: 906 NIPPTSSFLYKKSTVVLTPYKPLNLLGAPGNNK---RIIRCMANPRRVKMVAKQIQRELS 736
           N PP ++ L+    +    + P +   A    K     I+CMANPRRVKMVAKQIQRELS
Sbjct: 20  NSPPITTILHNPFPI----WTPKSAASAHLRQKPFINTIKCMANPRRVKMVAKQIQRELS 75

Query: 735 DMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVQVSADLQVVKVYVSVFGDERGKELAI 556
           DMLLTDKVLQ+A+LPEAALGAD+YLSSLTTISDV+VS DLQVVKVYVSVFGD+RGKE+AI
Sbjct: 76  DMLLTDKVLQYAILPEAALGADKYLSSLTTISDVEVSTDLQVVKVYVSVFGDDRGKEVAI 135

Query: 555 AGLKSKAKYVRGELGRRIKLRLTPEIRFIEDESLERGSRVIAILDRLKDEKNPAEDQDRD 376
           AGLK+KAKYVR ELGRR+KLRLTPEIRFIEDES ERGSRV+AILD++K EK     +  D
Sbjct: 136 AGLKAKAKYVRSELGRRMKLRLTPEIRFIEDESFERGSRVLAILDKIKAEKENTGSE--D 193

Query: 375 EVEDESSENRDDGDWQADDPDEDIIYV 295
           E+ + S   +DD DW+ DDPDE IIYV
Sbjct: 194 ELSESSDSPQDDRDWEGDDPDEGIIYV 220


>ref|NP_195199.2| ribosome-binding factor A [Arabidopsis thaliana]
           gi|78099793|sp|O65693.2|RBFA_ARATH RecName:
           Full=Probable ribosome-binding factor A, chloroplastic;
           Flags: Precursor gi|25082957|gb|AAN72022.1| putative
           protein [Arabidopsis thaliana]
           gi|30023650|gb|AAP13358.1| At4g34730 [Arabidopsis
           thaliana] gi|332661016|gb|AEE86416.1| ribosome-binding
           factor A [Arabidopsis thaliana]
          Length = 215

 Score =  257 bits (656), Expect = 4e-66
 Identities = 132/172 (76%), Positives = 148/172 (86%)
 Frame = -2

Query: 810 KRIIRCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVQ 631
           +R +RCMANPRRVKMVAKQI RELSDMLLTD VLQ AVLPEAALGADRYLSSLTTISDV+
Sbjct: 48  RRTVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVE 107

Query: 630 VSADLQVVKVYVSVFGDERGKELAIAGLKSKAKYVRGELGRRIKLRLTPEIRFIEDESLE 451
           VS DLQVVKVYVSVFGD+RGK++AIAGLKSKAKYVR ELG+R+KLRLTPE+RFIEDE++E
Sbjct: 108 VSNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAME 167

Query: 450 RGSRVIAILDRLKDEKNPAEDQDRDEVEDESSENRDDGDWQADDPDEDIIYV 295
           RGSRVIAILD++K EK   E +      + S    DD DW+ DDPDEDIIYV
Sbjct: 168 RGSRVIAILDKIKAEKGSGEGK-----TEPSDSTEDDQDWEVDDPDEDIIYV 214