BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00019341
         (2884 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   353   2e-94
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   331   6e-88
ref|XP_002530618.1| TFIIH basal transcription factor complex sub...   280   2e-72
ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group] g...   274   9e-71
dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare]    270   2e-69

>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
            protein product [Vitis vinifera]
          Length = 602

 Score =  353 bits (905), Expect = 2e-94
 Identities = 226/508 (44%), Positives = 299/508 (58%), Gaps = 14/508 (2%)
 Frame = -3

Query: 2879 TSVKLTIGLESVQKHLFNIEGEPQRSSSNLILDTTINGGRCIFKFENFSEHEVCCEFISK 2700
            +S +  +    ++ H F+  G  + +  NL  D+   GG  IF+FEN+ + EVC EF+ +
Sbjct: 40   SSARFDVEFRFIKGHKFSKGGSNKPALLNLTQDSE-KGGGYIFEFENYPDREVCREFVGR 98

Query: 2699 FLTNKLQSKKSCRKDPEPVSDIFSDEQLTTAEMDFCMKXXXXXXXLQKLHKQFVISGXXX 2520
             L    ++ K+     E  +    DEQL+T EM+  +K       LQKLHKQFV+SG   
Sbjct: 99   ALAKFSEASKA---GSEQSAVKLFDEQLSTIEMERRIKLLREDSELQKLHKQFVLSGVLT 155

Query: 2519 XXXXILGNKKGVAFY*CQQSSETMSKV*KCYDYIYRSSDRWEGQQKSLLT*HRRSLIRIF 2340
                    KK +     + S + +         +   +D    +    LT     + +IF
Sbjct: 156  EAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLT--PEIIHQIF 213

Query: 2339 AGKSAVHKAYLKFVPYKFSKVKFWTKYCQAKYLHRESNXXXXXXXXXXDEVIASFFKGDE 2160
            A K AVH+A+L FVP K ++  FW KYC+A+YLH   N          DE +A F K D+
Sbjct: 214  AEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDD 273

Query: 2159 TLANDSRRKLRRVDPTLDMEADQGDDYMH-------HDES*GDIDLECDEYN--LSHNLN 2007
             LAN++RRK+RRVDPTLDMEADQGDDYMH        D S   ID + ++Y   LS +LN
Sbjct: 274  ILANEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLN 333

Query: 2006 RHAAVVLQGRAEHVALGNT*TVAAEALSRSKQAEL-----DESATQAARMEMVYWMVAIE 1842
            RHAAVVL+GR   V L +T TVA EAL++SK+ E      D S T+  R+E +  M  IE
Sbjct: 334  RHAAVVLEGRPIDVELEDTRTVA-EALAKSKRVEAANEKSDGSVTRE-RLERISRMTEIE 391

Query: 1841 DLQEPHHKLPFAPLSIKDPRQYYDSQHANVVRNVGDAEFSTKPISHDLNTQHTCSFLQNL 1662
            DLQ P   LPFA L IKDPR Y+DSQ AN ++ +GD    +K I   L+TQ     L+  
Sbjct: 392  DLQAPRD-LPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEAYGSLRGF 450

Query: 1661 ISDMRENGFSDPVVWPDVALKVLIDLTQHHSSTKYHIGKCPQENVLDRLPEGNKEEALHH 1482
            IS+++  G SDP+V PD+ALKVL  LTQ+ SSTK+H+GK PQE+VLDRLP   KEE LHH
Sbjct: 451  ISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHH 510

Query: 1481 SASTQELLKHFWSSYPITTS*HYTKASK 1398
              S QELL+HFWSSYPITT+  YTKAS+
Sbjct: 511  WTSIQELLRHFWSSYPITTTYLYTKASR 538


>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  331 bits (849), Expect = 6e-88
 Identities = 225/551 (40%), Positives = 298/551 (54%), Gaps = 57/551 (10%)
 Frame = -3

Query: 2879 TSVKLTIGLESVQKHLFNIEGEPQRSSSNLILDTTINGGRCIFKFENFSEHEVCCEFISK 2700
            +S +  +    ++ H F+  G  + +  NL  D+   GG  IF+FEN+ + EVC EF+ K
Sbjct: 40   SSARFDVEFRFIKGHKFSKGGSNKPALLNLTQDSE-KGGGYIFEFENYPDREVCREFVGK 98

Query: 2699 FLTNKLQSKKSCRKDPEPVSDIFSDEQLTTAEMD-------------------------- 2598
             L    ++ K+     E  +    DEQL+T EM+                          
Sbjct: 99   ALAKFSEASKA---GSEQSAVKLFDEQLSTIEMERRIKLLREDRHSVPEEKFGVLLLKGI 155

Query: 2597 -----------------FCMKXXXXXXXLQKLHKQFVISGXXXXXXXILGNKKGVAFY*C 2469
                                K       LQKLHKQFV+SG           KK +     
Sbjct: 156  LPLFGETIIAMKLIDSGIASKVKWDCSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTS 215

Query: 2468 QQSSETMSKV*KCYDYIYRSSDRWEGQQKSLLT*HRRSLIRIFAGKSAVHKAYLKFVPYK 2289
            + S + +         +   +D    +    LT     + +IFA K AVH+A+L FVP K
Sbjct: 216  RTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLT--PEIIHQIFAEKPAVHQAFLNFVPNK 273

Query: 2288 FSKVKFWTKYCQAKYLHRESNXXXXXXXXXXDEVIASFFKGDETLANDSRRKLRRVDPTL 2109
             ++  FW KYC+A+YLH   N          DE +A F K D+ LA+++RRK+RRVDPTL
Sbjct: 274  MTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTL 333

Query: 2108 DMEADQGDDYMH-------HDES*GDIDLECDEYN--LSHNLNRHAAVVLQGRAEHVALG 1956
            DMEADQGDDYMH        D S   ID + ++Y   LS +LNRHAAVVL+GR   V L 
Sbjct: 334  DMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELE 393

Query: 1955 NT*TVAAEALSRSKQAEL-----DESATQAARMEMVYWMVAIEDLQEPHHKLPFAPLSIK 1791
            +T TVA EAL++SK+ E      D S T+  R+E +  M  IEDLQ P   LPFA L IK
Sbjct: 394  DTRTVA-EALAKSKRVEAANEKSDGSVTRE-RLERISRMTEIEDLQAPRD-LPFAALCIK 450

Query: 1790 DPRQYYDSQHANVVRNVGDAEFSTKPISHDLNTQHTCSFLQNLISDMRENGFSDPVVWPD 1611
            DPR Y+DSQ AN ++ +GD    +K I   L++Q     L+  IS+++  G SDP+V PD
Sbjct: 451  DPRDYFDSQQANALKTLGDTLAGSKQIKCSLSSQEAYGSLRGFISEIKSVGLSDPIVKPD 510

Query: 1610 VALKVLIDLTQHHSSTKYHIGKCPQENVLDRLPEGNKEEALHHSASTQELLKHFWSSYPI 1431
            +ALKVL  LTQ+ SSTK+H+GK PQE+VLDRLP   KEE LHH  S QELL+HFWSSYPI
Sbjct: 511  IALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPI 570

Query: 1430 TTS*HYTKASK 1398
            TT+  YTKAS+
Sbjct: 571  TTTYLYTKASR 581


>ref|XP_002530618.1| TFIIH basal transcription factor complex subunit, putative [Ricinus
            communis] gi|223529828|gb|EEF31761.1| TFIIH basal
            transcription factor complex subunit, putative [Ricinus
            communis]
          Length = 597

 Score =  280 bits (715), Expect = 2e-72
 Identities = 205/511 (40%), Positives = 276/511 (54%), Gaps = 20/511 (3%)
 Frame = -3

Query: 2870 KLTIGLESVQKHLFNIEGEPQRSSSNLILDTTINGG-RCIFKFENFSEHEVCCEFISKFL 2694
            KL +  + V  H    EG     S+  +L+ T N G   IF+FEN  +  +C E + K L
Sbjct: 44   KLDMDFKYVTNHKNTKEG-----SAKAMLNLTSNQGVSYIFEFENHDDLRICKEIVGKAL 98

Query: 2693 TNKLQSKKSCRKDPEPVSDIFSDEQLTTAEMDFCMKXXXXXXXLQKLHKQFVISGXXXXX 2514
            + KL         PE  SD     Q +T E+   M        LQKLHKQFV        
Sbjct: 99   S-KLGDTPKPPDAPEVPSD-----QPSTEELLLRMNLLRENLELQKLHKQFVSDRVLTDS 152

Query: 2513 XXILGNKKGVAFY*CQQSSETMSKV*KCYDYIYRSSDRWEGQQKSLLT*HRRSLIR-IFA 2337
                  KK +     + S ++  +V      +  S    +GQ   +       ++R IFA
Sbjct: 153  EFWATRKKLLNG---EFSRKSKQRVGLKSVMLADSKPLIDGQTNKVTFNLTPEIVREIFA 209

Query: 2336 GKSAVHKAYLKFVPYKFSKVKFWTKYCQAKYLHRESNXXXXXXXXXXDEVIASFFKGDET 2157
             K AVH+AYL  VP K S+  FWTKYC+A+YL R  N          DE +A F K D+ 
Sbjct: 210  EKPAVHQAYLSLVPNKMSERDFWTKYCRAEYLQRSRNIHAAAAEAAEDEELALFLKPDDI 269

Query: 2156 LANDSRRKLRRVDPTLDMEADQGDDYMH-------HDES*GDIDLECDEYN--LSHNLNR 2004
            LA+++R+K+R VDPTLDMEADQGDDY H        D S   I+ + + Y   L  +LNR
Sbjct: 270  LASETRQKIRCVDPTLDMEADQGDDYTHLPDHGIVRDGSKDVIESQHEPYRRTLLQDLNR 329

Query: 2003 HAAVVLQGRA-EHVALGNT*TVAAEALSRSKQA------ELDESATQAARMEMVYWMVAI 1845
            HAAVVL+G A +   L +T  VA +AL+RSK+       E D +A Q  R   +  M+ I
Sbjct: 330  HAAVVLEGTAIDDEQLQDTKAVA-DALARSKRGIKTINREADGNANQE-RSNRISQMMEI 387

Query: 1844 EDLQ--EPHHKLPFAPLSIKDPRQYYDSQHANVVRNVGDAEFSTKPISHDLNTQHTCSFL 1671
            EDLQ    HH    APL IKDPR Y+DSQ A+ ++N  D    T+     L++Q   + L
Sbjct: 388  EDLQGSNDHH---LAPLCIKDPRDYFDSQQASALKNSRDIPSGTEAARCSLSSQEAYASL 444

Query: 1670 QNLISDMRENGFSDPVVWPDVALKVLIDLTQHHSSTKYHIGKCPQENVLDRLPEGNKEEA 1491
            ++ I+  +  G +DP+V P++A KVL  LT + SSTKYH+GK  +E+VLDRLP   KEE 
Sbjct: 445  RDSITQTKAMGLNDPIVKPEIATKVLSILTHNISSTKYHLGKNSRESVLDRLPNTIKEEL 504

Query: 1490 LHHSASTQELLKHFWSSYPITTS*HYTKASK 1398
            LHH  S +ELL+H+WSSYPITT+  Y K S+
Sbjct: 505  LHHWMSIEELLRHYWSSYPITTAYLYAKVSR 535


>ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group]
            gi|38636938|dbj|BAD03200.1| unknown protein [Oryza sativa
            Japonica Group] gi|113623552|dbj|BAF23497.1| Os08g0338200
            [Oryza sativa Japonica Group]
            gi|215686948|dbj|BAG90767.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 604

 Score =  274 bits (701), Expect = 9e-71
 Identities = 198/512 (38%), Positives = 279/512 (54%), Gaps = 18/512 (3%)
 Frame = -3

Query: 2879 TSVKLTIGLESVQKHLFN-IEG-EPQRSSSNLILDTTINGGRCIFKFENFSEHEVCCEFI 2706
            +++KL +   S++ H FN ++G +P     NL  D+   GG  +F+F+N +  ++  +F+
Sbjct: 39   SAMKLNVDFRSIKGHKFNKVDGSKPAPPLLNLSKDSD-KGGGYMFEFDNVTNRDLSRDFV 97

Query: 2705 SKFLTNKLQSKKSCRKDPEPVSDIFS--DEQLTTAEMDFCMKXXXXXXXLQKLHKQFVIS 2532
            +K L  K Q     + +  P + + S  +EQL+ AEM   MK       LQKLH +FV+ 
Sbjct: 98   AKVL-GKQQGTIPPKPNVPPENSVTSTGEEQLSAAEMQRRMKLLQEDSELQKLHMKFVL- 155

Query: 2531 GXXXXXXXILGNKKGVAFY*CQQSSETMS--KV*KCYDYIYRSSDRWEGQQKSLLT*HRR 2358
            G           +K +      + S+     K     D    +  R      SL T    
Sbjct: 156  GNILQESEFWATRKNLLEDEANKGSKQRPGFKSAMLADVRPSADGRTNKVTFSLTT---E 212

Query: 2357 SLIRIFAGKSAVHKAYLKFVPYKFSKVKFWTKYCQAKYLHRESNXXXXXXXXXXDEVIAS 2178
             + +IFA K AVH+A+L FVP K S+  FWTKY +A+YL R  N          DE +A 
Sbjct: 213  IIHQIFAEKPAVHRAFLDFVPKKMSEKDFWTKYFRAEYLLRTKNTVAATAEAAEDEELAI 272

Query: 2177 FFKGDETLANDSRRKLRRVDPTLDMEADQGDDYMH-------HDES*GDIDL--ECDEYN 2025
            F K D+ LA ++R K++RVDPTLDMEAD GDDY+H        D S   ID   E     
Sbjct: 273  FLKNDDILAKEARLKIKRVDPTLDMEADAGDDYIHLPDHGIIRDGSKETIDNDGELARRT 332

Query: 2024 LSHNLNRHAAVVLQGRAEHVALGNT*TVAAEALSRSKQAELDESA---TQAARMEMVYWM 1854
            LS +LNRHAAVVL+GR+  V L +T TV AEA++RSK+     S    T   R+  V  M
Sbjct: 333  LSQDLNRHAAVVLEGRSSDVELTDTKTV-AEAIARSKKEPPSSSISDDTNHERLVKVARM 391

Query: 1853 VAIEDLQEPHHKLPFAPLSIKDPRQYYDSQHANVVRNVGDAEFSTKPISHDLNTQHTCSF 1674
              IEDLQ P   LP+APL IKDPR+Y+DSQ AN +R++G         +  L+T      
Sbjct: 392  TEIEDLQAP-RSLPYAPLCIKDPREYFDSQQANALRSLGGNNDGRHARNCRLSTDDAFDH 450

Query: 1673 LQNLISDMRENGFSDPVVWPDVALKVLIDLTQHHSSTKYHIGKCPQENVLDRLPEGNKEE 1494
            L   IS ++ NG + PV+  DVALKVL +L +  S ++    K PQ+++L ++P   ++E
Sbjct: 451  LLGQISSIKVNGLNYPVIQSDVALKVLNELNEGISRSRRLNLKNPQDSLLGQIPRRTRDE 510

Query: 1493 ALHHSASTQELLKHFWSSYPITTS*HYTKASK 1398
             + H A+ QELL+HFWSSYPITTS  Y K  +
Sbjct: 511  LMDHWAAIQELLQHFWSSYPITTSVLYNKVQR 542


>dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  270 bits (689), Expect = 2e-69
 Identities = 190/500 (38%), Positives = 270/500 (54%), Gaps = 16/500 (3%)
 Frame = -3

Query: 2873 VKLTIGLESVQKHLFN-IEGEPQRSSSNLILDTTINGGRCIFKFENFSEHEVCCEFISKF 2697
            +KL++   S++ H FN ++G         +   +  GG  IF+F+N    ++C +F+++ 
Sbjct: 41   MKLSVDFRSIKGHKFNKVDGSKPTPPLLNLSKVSDKGGGYIFEFDNVGNRDLCRDFVARV 100

Query: 2696 LTNKLQSKKSCRKD--PEPVSDIFSDEQLTTAEMDFCMKXXXXXXXLQKLHKQFVISGXX 2523
            L  K Q     R +  PE ++     EQL++AEM+  MK       LQKLHK+FV+ G  
Sbjct: 101  L-GKHQGTVPARPNVPPEKLAVSTGPEQLSSAEMERRMKLLREDSELQKLHKKFVL-GNI 158

Query: 2522 XXXXXILGNKKGVAFY*CQQSSETMSKV*KCYDYIYRSSDRWEGQQKSLLT*HRRSLI-R 2346
                     +K +      +SS+             R S   +GQ   +       +I +
Sbjct: 159  LQESEFWATRKNLLDDETNKSSKQKPGFKSAMLADVRPSA--DGQTNKVTFSLTTEIIHQ 216

Query: 2345 IFAGKSAVHKAYLKFVPYKFSKVKFWTKYCQAKYLHRESNXXXXXXXXXXDEVIASFFKG 2166
            IFA K AVH+A+L +VP K S+  FWTKYC+A+YL R  N          DE +A F K 
Sbjct: 217  IFAEKPAVHRAFLDYVPKKLSEKDFWTKYCRAEYLLRTKNTLAAKAEAADDEELAMFLKN 276

Query: 2165 DETLANDSRRKLRRVDPTLDMEADQGDDYMH---------HDES*GDIDLECDEYNLSHN 2013
            D+ LA +++ K++RVDPTLDMEAD GDDY+H               D D E     LS +
Sbjct: 277  DDILAKEAKLKIKRVDPTLDMEADAGDDYIHLPDHGILRDGSRETTDTDSELARRTLSQD 336

Query: 2012 LNRHAAVVLQGRAEHVALGNT*TVAAEALSRSKQAELDESATQAA---RMEMVYWMVAIE 1842
            LNRHAAVVL+GR+  +   +T TV AEAL+RSK+     S    A   R+     M  +E
Sbjct: 337  LNRHAAVVLEGRSTDIESTDTKTV-AEALARSKKEPPPSSVADDASHERLVKAARMTELE 395

Query: 1841 DLQEPHHKLPFAPLSIKDPRQYYDSQHANVVRNVGDAEFSTKPISHDLNTQHTCSFLQNL 1662
            DLQ P   LP+APL IKDPR+Y+DSQ AN +R +G+ +   K  S  L+       L + 
Sbjct: 396  DLQAP-RSLPYAPLCIKDPREYFDSQQANALRPLGNND-GRKARSCSLSADDAFRHLMDQ 453

Query: 1661 ISDMRENGFSDPVVWPDVALKVLIDLTQHHSSTKYHIGKCPQENVLDRLPEGNKEEALHH 1482
            IS ++ N    PVV  DVALKVL +L +  S ++    K PQ+++L RLP   ++E + H
Sbjct: 454  ISSVKMN---CPVVQADVALKVLNELNEGISRSRRLNLKNPQDSLLGRLPHRTRDELMDH 510

Query: 1481 SASTQELLKHFWSSYPITTS 1422
              + QELL+HFWSSYPITT+
Sbjct: 511  WTAIQELLRHFWSSYPITTA 530