BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018992
         (707 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178983.1| pentatricopeptide repeat-containing protein [Ar...   150   3e-34
ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [S...   149   4e-34
gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]        149   7e-34
ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containi...   144   1e-32
ref|NP_198063.1| pentatricopeptide repeat-containing protein [Ar...   144   2e-32

>ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g13600 gi|4558664|gb|AAD22682.1| hypothetical protein
           [Arabidopsis thaliana] gi|330251150|gb|AEC06244.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 697

 Score =  150 bits (378), Expect = 3e-34
 Identities = 71/206 (34%), Positives = 123/206 (59%)
 Frame = -1

Query: 629 SFNTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHG 450
           ++N+        +  ++AL +F    K G F+ + Y+  S++  C  LN  +  G  +H 
Sbjct: 119 TWNSMVSGFAQHDRCEEALCYFAMMHKEG-FVLNEYSFASVLSACSGLNDMN-KGVQVHS 176

Query: 449 FVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVYE 270
            + K  +L D+ + ++LV+MY K GN + +  +FDE+ +R+VV W +++T F QNG   E
Sbjct: 177 LIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVE 236

Query: 269 ALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAFV 90
           AL+ F  M+   + P+ +TL+SV+SAC+ L  + +G+ VHG  ++ND  ++D++L  AFV
Sbjct: 237 ALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFV 296

Query: 89  DMYAKCRNLDYGIRIFDGMKEKSSVS 12
           DMYAKC  +     IFD M  ++ ++
Sbjct: 297 DMYAKCSRIKEARFIFDSMPIRNVIA 322



 Score =  108 bits (269), Expect = 1e-21
 Identities = 70/222 (31%), Positives = 103/222 (46%), Gaps = 31/222 (13%)
 Frame = -1

Query: 578 ALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHGFVIKKGYLQDIVVSTSL 399
           A   F K   +     DS     L+  C     S+++   +H  VIK G+  +I +   L
Sbjct: 2   ATKSFLKLAADLSSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRL 61

Query: 398 VEMYFKYGNFSGSVYLFDEIS-------------------------------ERDVVLWT 312
           ++ Y K G+      +FD++                                ERD   W 
Sbjct: 62  IDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWN 121

Query: 311 AMVTGFSQNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRN 132
           +MV+GF+Q+    EAL +FA M +EG   N  + +SVLSACS L  +N G  VH   I  
Sbjct: 122 SMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSL-IAK 180

Query: 131 DVFKDDVVLKTAFVDMYAKCRNLDYGIRIFDGMKEKSSVSWN 6
             F  DV + +A VDMY+KC N++   R+FD M +++ VSWN
Sbjct: 181 SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWN 222



 Score =  104 bits (259), Expect = 2e-20
 Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 38/214 (17%)
 Frame = -1

Query: 533 PDSYAIPSLVKLCYSLNQSSLHGENIHGFVIKKGYLQ-DIVVSTSLVEMYFKYGNFSGSV 357
           PD   + S++  C SL+   + G+ +HG V+K   L+ DI++S + V+MY K      + 
Sbjct: 251 PDEVTLASVISACASLSAIKV-GQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEAR 309

Query: 356 YLFD-------------------------------EISERDVVLWTAMVTGFSQNGLVYE 270
           ++FD                               +++ER+VV W A++ G++QNG   E
Sbjct: 310 FIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEE 369

Query: 269 ALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSV------HGFSIRNDVFKDDVV 108
           AL  F  + RE + P   + +++L AC+ L  ++LG         HGF  ++   +DD+ 
Sbjct: 370 ALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGE-EDDIF 428

Query: 107 LKTAFVDMYAKCRNLDYGIRIFDGMKEKSSVSWN 6
           +  + +DMY KC  ++ G  +F  M E+  VSWN
Sbjct: 429 VGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWN 462



 Score = 93.2 bits (230), Expect = 5e-17
 Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
 Frame = -1

Query: 629 SFNTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSL----HGE 462
           S+N     +  +   ++AL+ F   K+  +  P  Y+  +++K C  L +  L    H  
Sbjct: 353 SWNALIAGYTQNGENEEALSLFCLLKRESV-CPTHYSFANILKACADLAELHLGMQAHVH 411

Query: 461 NI-HGFVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQN 285
            + HGF  + G   DI V  SL++MY K G       +F ++ ERD V W AM+ GF+QN
Sbjct: 412 VLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQN 471

Query: 284 GLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFS 141
           G   EALE F  M+  G +P+ IT+  VLSAC     V  G+  H FS
Sbjct: 472 GYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGR--HYFS 517


>ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
            gi|241920207|gb|EER93351.1| hypothetical protein
            SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  149 bits (377), Expect = 4e-34
 Identities = 75/206 (36%), Positives = 125/206 (60%)
 Frame = -1

Query: 623  NTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHGFV 444
            +T    ++ +   +KAL  F ++       P++  + S++  C S++   L G+ IHG+V
Sbjct: 413  STVISGYVLNGMSEKALQMF-RYLLEQCIKPNAVTVASVLPACASISALPL-GQEIHGYV 470

Query: 443  IKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVYEAL 264
            ++  Y     V ++L++MY K G    S Y+F ++S +D V W +M++ FSQNG   EAL
Sbjct: 471  LRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEAL 530

Query: 263  EFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAFVDM 84
            + F +M  EGI+ N +T+SS LSAC+ L  +  GK +HG  I+  + K D+  ++A +DM
Sbjct: 531  DLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPI-KADIFAESALIDM 589

Query: 83   YAKCRNLDYGIRIFDGMKEKSSVSWN 6
            YAKC N++  +R+F+ M +K+ VSWN
Sbjct: 590  YAKCGNMELALRVFEFMPDKNEVSWN 615



 Score =  120 bits (302), Expect = 2e-25
 Identities = 66/208 (31%), Positives = 118/208 (56%)
 Frame = -1

Query: 629 SFNTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHG 450
           ++N      + +  LD+AL  F    ++G   PDS  + SL+     LN     G+ +HG
Sbjct: 310 TWNGMISGCVQNGLLDEALGLFCDMLRSGA-RPDSVTLVSLLPALTDLNGLK-QGKEVHG 367

Query: 449 FVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVYE 270
           ++I+     D  + ++LV++YFK  +   +  L+D     DVV+ + +++G+  NG+  +
Sbjct: 368 YIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEK 427

Query: 269 ALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAFV 90
           AL+ F  ++ + I+PN +T++SVL AC+ +  + LG+ +HG+ +RN  ++    +++A +
Sbjct: 428 ALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRN-AYEGKCYVESALM 486

Query: 89  DMYAKCRNLDYGIRIFDGMKEKSSVSWN 6
           DMYAKC  LD    IF  M  K  V+WN
Sbjct: 487 DMYAKCGRLDLSHYIFSKMSLKDEVTWN 514



 Score =  105 bits (263), Expect = 7e-21
 Identities = 63/199 (31%), Positives = 104/199 (52%)
 Frame = -1

Query: 626 FNTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHGF 447
           +N     +I + ++  A+  F   + +G   P+   +   + +C +     L G  +H  
Sbjct: 210 WNVMMDGYIKAGDVGGAVRLFRNMRVSGCE-PNFATLACFLSVC-AAEADLLSGVQLHSL 267

Query: 446 VIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVYEA 267
            +K G  Q++ V+ +L+ MY K      +  LF+ +   D+V W  M++G  QNGL+ EA
Sbjct: 268 AVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEA 327

Query: 266 LEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAFVD 87
           L  F  M+R G RP+ +TL S+L A + L  +  GK VHG+ IRN V   D  L +A VD
Sbjct: 328 LGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHM-DAFLVSALVD 386

Query: 86  MYAKCRNLDYGIRIFDGMK 30
           +Y KCR++     ++D  +
Sbjct: 387 IYFKCRDVRTARNLYDAAR 405



 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 56/176 (31%), Positives = 89/176 (50%)
 Frame = -1

Query: 533 PDSYAIPSLVKLCYSLNQSSLHGENIHGFVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVY 354
           PD++ +P +VK C +L   SL G  +H      G   D+ V ++L++MY   G    +  
Sbjct: 139 PDAHTLPYVVKSCAALGAVSL-GRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARD 197

Query: 353 LFDEISERDVVLWTAMVTGFSQNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMV 174
            FD +  RD VLW  M+ G+ + G V  A+  F  M   G  PN  TL+  LS C+    
Sbjct: 198 AFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEAD 257

Query: 173 VNLGKSVHGFSIRNDVFKDDVVLKTAFVDMYAKCRNLDYGIRIFDGMKEKSSVSWN 6
           +  G  +H  +++  + + +V +    + MYAKCR LD   R+F+ +     V+WN
Sbjct: 258 LLSGVQLHSLAVKCGL-EQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWN 312



 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 51/202 (25%), Positives = 102/202 (50%)
 Frame = -1

Query: 629  SFNTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHG 450
            ++N+   +   +    +AL  F +    G+   ++  I S +  C SL  +  +G+ IHG
Sbjct: 512  TWNSMISSFSQNGEPQEALDLFRQMCMEGIKY-NNVTISSALSACASL-PAIYYGKEIHG 569

Query: 449  FVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVYE 270
             +IK     DI   ++L++MY K GN   ++ +F+ + +++ V W ++++ +  +GLV E
Sbjct: 570  VIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKE 629

Query: 269  ALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAFV 90
            ++ F  RM  EG +P+ +T  +++SAC+   +V  G  +     +  +    +      V
Sbjct: 630  SVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMV 689

Query: 89   DMYAKCRNLDYGIRIFDGMKEK 24
            D+Y++   LD  I+    M  K
Sbjct: 690  DLYSRSGRLDKAIQFIADMPFK 711


>gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  149 bits (375), Expect = 7e-34
 Identities = 76/206 (36%), Positives = 127/206 (61%)
 Frame = -1

Query: 623  NTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHGFV 444
            +T    ++ +   ++AL  F ++       P++  I S++  C S+    L G+ IHG+V
Sbjct: 413  STMISGYVLNGMSEEALQMF-RYLLEQCIKPNAVTIASVLPGCASMAALPL-GQQIHGYV 470

Query: 443  IKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVYEAL 264
            ++  Y +   V ++L++MY K G    S Y+F ++S++D V W +M++ FSQNG   EAL
Sbjct: 471  LRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEAL 530

Query: 263  EFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAFVDM 84
            + F +M  EGI+ N IT+S+ LSAC+ L  +  GK +HG +I+  + K D+  ++A +DM
Sbjct: 531  DLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPI-KADIFAESALIDM 589

Query: 83   YAKCRNLDYGIRIFDGMKEKSSVSWN 6
            YAKC NL+  +R+F+ M +K+ VSWN
Sbjct: 590  YAKCGNLELALRVFEFMPDKNEVSWN 615



 Score =  119 bits (298), Expect = 6e-25
 Identities = 59/176 (33%), Positives = 105/176 (59%)
 Frame = -1

Query: 533 PDSYAIPSLVKLCYSLNQSSLHGENIHGFVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVY 354
           PDS  + SL+     LN     G+ +HG++++     D+ + ++LV++YFK  +   +  
Sbjct: 341 PDSITLVSLLPALTDLNGLK-QGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQN 399

Query: 353 LFDEISERDVVLWTAMVTGFSQNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMV 174
           L+D     DVV+ + M++G+  NG+  EAL+ F  ++ + I+PN +T++SVL  C+ +  
Sbjct: 400 LYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAA 459

Query: 173 VNLGKSVHGFSIRNDVFKDDVVLKTAFVDMYAKCRNLDYGIRIFDGMKEKSSVSWN 6
           + LG+ +HG+ +RN  ++    +++A +DMYAKC  LD    IF  M +K  V+WN
Sbjct: 460 LPLGQQIHGYVLRN-AYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWN 514



 Score =  103 bits (257), Expect = 3e-20
 Identities = 63/199 (31%), Positives = 103/199 (51%)
 Frame = -1

Query: 626 FNTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHGF 447
           +N      I + ++D A+  F   + +G   P+   +   + +C + +   L G  +H  
Sbjct: 210 WNVMMDGCIKAGDVDGAVRLFRNMRASGCE-PNFATLACFLSVC-ATDADLLSGAQLHSL 267

Query: 446 VIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVYEA 267
            +K G   ++ V+ +L+ MY K      +  LF+ + + D+V W  M++G  QNGL  EA
Sbjct: 268 AVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEA 327

Query: 266 LEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAFVD 87
              F  M R G RP+ ITL S+L A + L  +  GK VHG+ +RN V   DV L +A VD
Sbjct: 328 FGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCV-NMDVFLVSALVD 386

Query: 86  MYAKCRNLDYGIRIFDGMK 30
           +Y KCR++     ++D  +
Sbjct: 387 IYFKCRDVRMAQNLYDAAR 405



 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 59/176 (33%), Positives = 90/176 (51%)
 Frame = -1

Query: 533 PDSYAIPSLVKLCYSLNQSSLHGENIHGFVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVY 354
           PD++ +P +VK C +L   SL G  +H      G   D+ V ++LV+MY   G    +  
Sbjct: 139 PDAHTLPYVVKSCAALGAMSL-GRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARD 197

Query: 353 LFDEISERDVVLWTAMVTGFSQNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMV 174
            FD I ERD VLW  M+ G  + G V  A+  F  M   G  PN  TL+  LS C+    
Sbjct: 198 AFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDAD 257

Query: 173 VNLGKSVHGFSIRNDVFKDDVVLKTAFVDMYAKCRNLDYGIRIFDGMKEKSSVSWN 6
           +  G  +H  +++  + + +V +    + MYAKC+ LD   R+F+ M +   V+WN
Sbjct: 258 LLSGAQLHSLAVKCGL-EPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWN 312



 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 48/202 (23%), Positives = 99/202 (49%)
 Frame = -1

Query: 629  SFNTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHG 450
            ++N+   +   +    +AL  F +    G+   ++  I + +  C SL  +  +G+ IHG
Sbjct: 512  TWNSMISSFSQNGKPQEALDLFRQMCMEGIKY-NNITISAALSACASL-PAIYYGKEIHG 569

Query: 449  FVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVYE 270
              IK     DI   ++L++MY K GN   ++ +F+ + +++ V W ++++ +  +GLV E
Sbjct: 570  VTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKE 629

Query: 269  ALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAFV 90
            ++     M  EG +P+ +T  +++SAC+   +V  G  +     +  +    +      V
Sbjct: 630  SVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMV 689

Query: 89   DMYAKCRNLDYGIRIFDGMKEK 24
            D+Y++   LD  I+    M  K
Sbjct: 690  DLYSRSGKLDKAIQFIADMPFK 711



 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
 Frame = -1

Query: 467 GENIHGFVIKKGYLQD---IVVSTSLVEMYFKYGNFSGSVYLFDEI---SERDVVLWTAM 306
           G  IH   +  G L D   + + T L+ MY     F  +V +F  +   +    + W  +
Sbjct: 51  GLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWL 110

Query: 305 VTGFSQNGLVYEALEFFARMVREGIRPN--GITLSSVLSACSKLMVVNLGKSVHGFSIRN 132
           + GF+  G  + A+ F+ +M      P+    TL  V+ +C+ L  ++LG+ VH  + R 
Sbjct: 111 IRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHR-TARA 169

Query: 131 DVFKDDVVLKTAFVDMYAKCRNLDYGIRIFDGMKEKSSVSWNV 3
               +DV + +A V MYA    L      FDG+ E+  V WNV
Sbjct: 170 IGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNV 212


>ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  144 bits (364), Expect = 1e-32
 Identities = 67/176 (38%), Positives = 112/176 (63%)
 Frame = -1

Query: 533 PDSYAIPSLVKLCYSLNQSSLHGENIHGFVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVY 354
           P++  + S +  C S+    + G+ +HG+V+K  Y     V ++L++MY K G    S Y
Sbjct: 448 PNAVMVASTLPACASMAAMRI-GQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHY 506

Query: 353 LFDEISERDVVLWTAMVTGFSQNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMV 174
           +F ++S +D V W +M++ F+QNG   EAL+ F +M+ EG++ N +T+SS+LSAC+ L  
Sbjct: 507 MFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPA 566

Query: 173 VNLGKSVHGFSIRNDVFKDDVVLKTAFVDMYAKCRNLDYGIRIFDGMKEKSSVSWN 6
           +  GK +HG  I+  + + D+  ++A +DMY KC NL+  +R+F+ M EK+ VSWN
Sbjct: 567 IYYGKEIHGIIIKGPI-RADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWN 621



 Score =  114 bits (286), Expect = 1e-23
 Identities = 61/208 (29%), Positives = 116/208 (55%)
 Frame = -1

Query: 629 SFNTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHG 450
           ++N      + +  +D AL  F   +K+GL  PDS  + SL+     LN     G+ IHG
Sbjct: 316 TWNGMISGCVQNGLVDDALRLFCDMQKSGL-QPDSVTLASLLPALTELNGFK-QGKEIHG 373

Query: 449 FVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVYE 270
           ++++     D+ + ++LV++YFK  +   +  +FD     DVV+ + M++G+  N +   
Sbjct: 374 YIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEA 433

Query: 269 ALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAFV 90
           A++ F  ++  GI+PN + ++S L AC+ +  + +G+ +HG+ ++N  ++    +++A +
Sbjct: 434 AVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKN-AYEGRCYVESALM 492

Query: 89  DMYAKCRNLDYGIRIFDGMKEKSSVSWN 6
           DMY+KC  LD    +F  M  K  V+WN
Sbjct: 493 DMYSKCGRLDLSHYMFSKMSAKDEVTWN 520



 Score =  102 bits (255), Expect = 6e-20
 Identities = 60/199 (30%), Positives = 103/199 (51%)
 Frame = -1

Query: 626 FNTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHGF 447
           +N     ++ + ++  A+  F   + +G   P+   +   + +C +     L G  +H  
Sbjct: 216 WNVMMDGYVKAGDVASAVGLFRVMRASGCD-PNFATLACFLSVC-AAEADLLSGVQLHTL 273

Query: 446 VIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVYEA 267
            +K G   ++ V+ +LV MY K      +  LF  +   D+V W  M++G  QNGLV +A
Sbjct: 274 AVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDA 333

Query: 266 LEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAFVD 87
           L  F  M + G++P+ +TL+S+L A ++L     GK +HG+ +RN     DV L +A VD
Sbjct: 334 LRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHV-DVFLVSALVD 392

Query: 86  MYAKCRNLDYGIRIFDGMK 30
           +Y KCR++     +FD  K
Sbjct: 393 IYFKCRDVRMAQNVFDATK 411



 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 57/176 (32%), Positives = 90/176 (51%)
 Frame = -1

Query: 533 PDSYAIPSLVKLCYSLNQSSLHGENIHGFVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVY 354
           PD + +P +VK C +L    L G  +H      G  +D+ V ++L++MY   G   G+  
Sbjct: 145 PDGHTLPYVVKSCAALGALHL-GRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGARE 203

Query: 353 LFDEISERDVVLWTAMVTGFSQNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMV 174
           +FD + ERD VLW  M+ G+ + G V  A+  F  M   G  PN  TL+  LS C+    
Sbjct: 204 VFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEAD 263

Query: 173 VNLGKSVHGFSIRNDVFKDDVVLKTAFVDMYAKCRNLDYGIRIFDGMKEKSSVSWN 6
           +  G  +H  +++  + + +V +    V MYAKC+ L+   R+F  M     V+WN
Sbjct: 264 LLSGVQLHTLAVKYGL-EPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWN 318



 Score = 78.6 bits (192), Expect = 1e-12
 Identities = 47/202 (23%), Positives = 100/202 (49%)
 Frame = -1

Query: 629  SFNTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHG 450
            ++N+   +   +   ++AL  F +    G+   ++  I S++  C  L  +  +G+ IHG
Sbjct: 518  TWNSMISSFAQNGEPEEALDLFRQMIMEGVKY-NNVTISSILSACAGL-PAIYYGKEIHG 575

Query: 449  FVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVYE 270
             +IK     D+   ++L++MY K GN   ++ +F+ + E++ V W ++++ +  +GLV E
Sbjct: 576  IIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKE 635

Query: 269  ALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAFV 90
            +++    M  EG + + +T  +++SAC+    V  G  +          +  V   +  V
Sbjct: 636  SVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMV 695

Query: 89   DMYAKCRNLDYGIRIFDGMKEK 24
            D+Y++   LD  ++    M  K
Sbjct: 696  DLYSRAGKLDKAMQFIADMPFK 717



 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 10/187 (5%)
 Frame = -1

Query: 533 PDSYAIPSLVKLCYSLNQSSLHGENIHGFVIKKGYLQ-----DIVVSTSLVEMYFKYGNF 369
           P +Y + +L++ C + +   L G  IH   +  G L         + T LV MY     F
Sbjct: 34  PCAYRLLALLRGCVAPSHLPL-GLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRF 92

Query: 368 SGSVYLFDEISERDVVL---WTAMVTGFSQNGLVYEALEFFARMVRE--GIRPNGITLSS 204
             +V +F  +          W  ++ GF+  G    A+ F+ +M       RP+G TL  
Sbjct: 93  RDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPY 152

Query: 203 VLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAFVDMYAKCRNLDYGIRIFDGMKEK 24
           V+ +C+ L  ++LG+ VH  + R      D+ + +A + MYA    LD    +FDGM E+
Sbjct: 153 VVKSCAALGALHLGRLVHR-TTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDER 211

Query: 23  SSVSWNV 3
             V WNV
Sbjct: 212 DCVLWNV 218


>ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635756|sp|O04659.2|PP398_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g27110 gi|332006268|gb|AED93651.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  144 bits (363), Expect = 2e-32
 Identities = 75/209 (35%), Positives = 119/209 (56%)
 Frame = -1

Query: 632 YSFNTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIH 453
           Y +N+    +  ++     L  F +     + +PDS+  P+++K   +L +  L G  IH
Sbjct: 72  YIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFL-GRMIH 130

Query: 452 GFVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVY 273
             V+K GY+ D+VV++SLV MY K+  F  S+ +FDE+ ERDV  W  +++ F Q+G   
Sbjct: 131 TLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAE 190

Query: 272 EALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAF 93
           +ALE F RM   G  PN ++L+  +SACS+L+ +  GK +H   ++   F+ D  + +A 
Sbjct: 191 KALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKG-FELDEYVNSAL 249

Query: 92  VDMYAKCRNLDYGIRIFDGMKEKSSVSWN 6
           VDMY KC  L+    +F  M  KS V+WN
Sbjct: 250 VDMYGKCDCLEVAREVFQKMPRKSLVAWN 278



 Score =  115 bits (287), Expect = 1e-23
 Identities = 61/177 (34%), Positives = 103/177 (58%)
 Frame = -1

Query: 533 PDSYAIPSLVKLCYSLNQSSLHGENIHGFVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVY 354
           P    + S++  C S +++ LHG+ IHG+VI+     DI V+ SL+++YFK G  + +  
Sbjct: 307 PSQTTLTSILMAC-SRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAET 365

Query: 353 LFDEISERDVVLWTAMVTGFSQNGLVYEALEFFARMVREGIRPNGITLSSVLSACSKLMV 174
           +F +  +     W  M++ +   G  ++A+E + +MV  G++P+ +T +SVL ACS+L  
Sbjct: 366 VFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAA 425

Query: 173 VNLGKSVHGFSIRNDVFKDDVVLKTAFVDMYAKCRNLDYGIRIFDGMKEKSSVSWNV 3
           +  GK +H  SI     + D +L +A +DMY+KC N     RIF+ + +K  VSW V
Sbjct: 426 LEKGKQIH-LSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTV 481



 Score =  108 bits (271), Expect = 8e-22
 Identities = 64/209 (30%), Positives = 109/209 (52%)
 Frame = -1

Query: 629 SFNTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHG 450
           S+NT       S   +KAL  F + + +G F P+S ++   +  C  L      G+ IH 
Sbjct: 175 SWNTVISCFYQSGEAEKALELFGRMESSG-FEPNSVSLTVAISACSRLLWLE-RGKEIHR 232

Query: 449 FVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVYE 270
             +KKG+  D  V+++LV+MY K      +  +F ++  + +V W +M+ G+   G    
Sbjct: 233 KCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKS 292

Query: 269 ALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLGKSVHGFSIRNDVFKDDVVLKTAFV 90
            +E   RM+ EG RP+  TL+S+L ACS+   +  GK +HG+ IR+ V   D+ +  + +
Sbjct: 293 CVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRS-VVNADIYVNCSLI 351

Query: 89  DMYAKCRNLDYGIRIFDGMKEKSSVSWNV 3
           D+Y KC   +    +F   ++  + SWNV
Sbjct: 352 DLYFKCGEANLAETVFSKTQKDVAESWNV 380



 Score = 87.0 bits (214), Expect = 3e-15
 Identities = 49/177 (27%), Positives = 98/177 (55%), Gaps = 2/177 (1%)
 Frame = -1

Query: 530 DSYAIPSLVKLCYSLNQSSLHGENIHGFVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYL 351
           +S  + SL++ C +  +S    + +H  ++  G  +D+V+  SL+ +YF   +   + ++
Sbjct: 2   ESSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHV 61

Query: 350 FDEISER-DVVLWTAMVTGFSQNGLVYEALEFFARMVREGI-RPNGITLSSVLSACSKLM 177
           F+    R DV +W ++++G+S+N + ++ LE F R++   I  P+  T  +V+ A   L 
Sbjct: 62  FENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALG 121

Query: 176 VVNLGKSVHGFSIRNDVFKDDVVLKTAFVDMYAKCRNLDYGIRIFDGMKEKSSVSWN 6
              LG+ +H   +++  +  DVV+ ++ V MYAK    +  +++FD M E+   SWN
Sbjct: 122 REFLGRMIHTLVVKSG-YVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWN 177



 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 47/156 (30%), Positives = 84/156 (53%)
 Frame = -1

Query: 629 SFNTTFRAHINSNNLDKALTHFTKFKKNGLFLPDSYAIPSLVKLCYSLNQSSLHGENIHG 450
           S+N    ++I+  N  KA+  + +    G+  PD     S++  C  L      G+ IH 
Sbjct: 377 SWNVMISSYISVGNWFKAVEVYDQMVSVGV-KPDVVTFTSVLPACSQLAALE-KGKQIHL 434

Query: 449 FVIKKGYLQDIVVSTSLVEMYFKYGNFSGSVYLFDEISERDVVLWTAMVTGFSQNGLVYE 270
            + +     D ++ ++L++MY K GN   +  +F+ I ++DVV WT M++ +  +G   E
Sbjct: 435 SISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPRE 494

Query: 269 ALEFFARMVREGIRPNGITLSSVLSACSKLMVVNLG 162
           AL  F  M + G++P+G+TL +VLSAC    +++ G
Sbjct: 495 ALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEG 530