BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018991
         (229 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF22733.1| U2AF large subunit [Brachypodium distachyon]            63   2e-08
gb|ABU45195.1| unknown [Petunia integrifolia subsp. inflata]           61   8e-08
ref|XP_002979723.1| hypothetical protein SELMODRAFT_13030 [Selag...    59   4e-07
ref|XP_002988368.1| hypothetical protein SELMODRAFT_235524 [Sela...    59   4e-07
sp|Q2QKB4.1|U2A2B_WHEAT RecName: Full=Splicing factor U2af large...    58   7e-07

>gb|ACF22733.1| U2AF large subunit [Brachypodium distachyon]
          Length = 569

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 5/81 (6%)
 Frame = -2

Query: 228 MSRIHVTPQASRHARRIYVGGLRSGTSKEAIVELFN--CEVKGSFHSG---VVLDVHVNQ 64
           M++ H+ PQA+RHARR+YVGGL    +++++   FN      G   +G    VL+V++N 
Sbjct: 221 MTQQHIFPQATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINH 280

Query: 63  EESYAIVEFFSVEEASQAMKL 1
           ++ +A VE  SVEEAS AM L
Sbjct: 281 DKKFAFVEMRSVEEASNAMAL 301


>gb|ABU45195.1| unknown [Petunia integrifolia subsp. inflata]
          Length = 506

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
 Frame = -2

Query: 213 VTPQASRHARRIYVGGLRSGTSKEAIVELFN--CEVKGSFHSG---VVLDVHVNQEESYA 49
           +T QA+RHARR+YVGGL S  +++++   F+      G   +G    V+DV++N E+ +A
Sbjct: 165 MTQQATRHARRVYVGGLPSSANEQSVATFFSHVMYAIGGNTAGPGDAVIDVYINHEKKFA 224

Query: 48  IVEFFSVEEASQAMKL 1
            VE  SVEEAS AM L
Sbjct: 225 FVEMRSVEEASNAMAL 240


>ref|XP_002979723.1| hypothetical protein SELMODRAFT_13030 [Selaginella moellendorffii]
           gi|300152483|gb|EFJ19125.1| hypothetical protein
           SELMODRAFT_13030 [Selaginella moellendorffii]
          Length = 360

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
 Frame = -2

Query: 213 VTPQASRHARRIYVGGLRSGTSKEAIVELFN---CEVKGSFHS--GVVLDVHVNQEESYA 49
           +T QA+RHAR++YVGGL    +++ I   FN     V G+      VV++V++NQE+ +A
Sbjct: 21  MTQQATRHARQVYVGGLPGLVNEQTIATFFNQVMVNVGGNTAGPGDVVVNVYINQEKKFA 80

Query: 48  IVEFFSVEEASQAMKL 1
            VE  +VEEAS AM L
Sbjct: 81  FVEMRTVEEASNAMAL 96


>ref|XP_002988368.1| hypothetical protein SELMODRAFT_235524 [Selaginella moellendorffii]
           gi|300143770|gb|EFJ10458.1| hypothetical protein
           SELMODRAFT_235524 [Selaginella moellendorffii]
          Length = 353

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
 Frame = -2

Query: 213 VTPQASRHARRIYVGGLRSGTSKEAIVELFN---CEVKGSFHS--GVVLDVHVNQEESYA 49
           +T QA+RHAR++YVGGL    +++ I   FN     V G+      VV++V++NQE+ +A
Sbjct: 14  MTQQATRHARQVYVGGLPGLVNEQTIATFFNQVMVNVGGNTAGPGDVVVNVYINQEKKFA 73

Query: 48  IVEFFSVEEASQAMKL 1
            VE  +VEEAS AM L
Sbjct: 74  FVEMRTVEEASNAMAL 89


>sp|Q2QKB4.1|U2A2B_WHEAT RecName: Full=Splicing factor U2af large subunit B; AltName:
           Full=U2 auxiliary factor 65 kDa subunit B; AltName:
           Full=U2 small nuclear ribonucleoprotein auxiliary factor
           large subunit B; Short=U2 snRNP auxiliary factor large
           subunit B gi|68036764|gb|AAY84880.1| U2AF large subunit
           [Triticum aestivum]
          Length = 543

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
 Frame = -2

Query: 213 VTPQASRHARRIYVGGLRSGTSKEAIVELFN--CEVKGSFHSG---VVLDVHVNQEESYA 49
           +T QA+RHARR+YVGGL    +++++   FN      G   +G    VL+V++N ++ +A
Sbjct: 198 MTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFA 257

Query: 48  IVEFFSVEEASQAMKL 1
            VE  SVEEAS AM L
Sbjct: 258 FVEMRSVEEASNAMAL 273