BLASTX nr result

ID: Coptis21_contig00018965 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018965
         (448 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR18459.1| unknown [Picea sitchensis]                              92   9e-27
ref|XP_002982634.1| hypothetical protein SELMODRAFT_155177 [Sela...    92   1e-26
ref|XP_002981151.1| hypothetical protein SELMODRAFT_233646 [Sela...    92   1e-26
ref|XP_002464182.1| hypothetical protein SORBIDRAFT_01g013730 [S...    94   2e-26
ref|NP_001105556.1| MSI type nucleosome/chromatin assembly facto...    94   2e-26

>gb|ABR18459.1| unknown [Picea sitchensis]
          Length = 421

 Score = 92.0 bits (227), Expect(2) = 9e-27
 Identities = 44/65 (67%), Positives = 48/65 (73%), Gaps = 10/65 (15%)
 Frame = +3

Query: 51  YKVWKKNTPVLYDLVISHALEWPSLTVQWLP----------SSSSLILGTHTCDGAPNFL 200
           YK+WKKNTP LYDLVI+HALEWPSLTVQWLP          S   +ILGTHT D  PN+L
Sbjct: 21  YKIWKKNTPFLYDLVITHALEWPSLTVQWLPDREEPPGKDYSVQKMILGTHTSDNEPNYL 80

Query: 201 MLAQV 215
           MLAQV
Sbjct: 81  MLAQV 85



 Score = 53.1 bits (126), Expect(2) = 9e-27
 Identities = 26/45 (57%), Positives = 34/45 (75%)
 Frame = +2

Query: 314 RVQITHQIRLDDSDGEINRARYMPQNPHLIAAKTSASDVCVFDSS 448
           +VQ+  QI   + DGE+NRARYMPQNP +IA KT +++V VFD S
Sbjct: 115 KVQVIQQI---NHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYS 156


>ref|XP_002982634.1| hypothetical protein SELMODRAFT_155177 [Selaginella moellendorffii]
           gi|300149733|gb|EFJ16387.1| hypothetical protein
           SELMODRAFT_155177 [Selaginella moellendorffii]
          Length = 434

 Score = 92.0 bits (227), Expect(2) = 1e-26
 Identities = 44/65 (67%), Positives = 48/65 (73%), Gaps = 10/65 (15%)
 Frame = +3

Query: 51  YKVWKKNTPVLYDLVISHALEWPSLTVQWLP----------SSSSLILGTHTCDGAPNFL 200
           YK+WKKNTP LYDLVI+HALEWPSLTVQWLP          S   LILGTHT D  PNFL
Sbjct: 21  YKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRVEPPGKDYSVQKLILGTHTSDNEPNFL 80

Query: 201 MLAQV 215
           M+A+V
Sbjct: 81  MIAEV 85



 Score = 52.8 bits (125), Expect(2) = 1e-26
 Identities = 26/45 (57%), Positives = 34/45 (75%)
 Frame = +2

Query: 314 RVQITHQIRLDDSDGEINRARYMPQNPHLIAAKTSASDVCVFDSS 448
           +VQ+  QI   + DGE+NRARYMPQNP +IA KT +++V VFD S
Sbjct: 115 KVQVIQQI---NHDGEVNRARYMPQNPFVIATKTVSAEVFVFDYS 156


>ref|XP_002981151.1| hypothetical protein SELMODRAFT_233646 [Selaginella moellendorffii]
           gi|300151205|gb|EFJ17852.1| hypothetical protein
           SELMODRAFT_233646 [Selaginella moellendorffii]
          Length = 413

 Score = 92.0 bits (227), Expect(2) = 1e-26
 Identities = 44/65 (67%), Positives = 48/65 (73%), Gaps = 10/65 (15%)
 Frame = +3

Query: 51  YKVWKKNTPVLYDLVISHALEWPSLTVQWLP----------SSSSLILGTHTCDGAPNFL 200
           YK+WKKNTP LYDLVI+HALEWPSLTVQWLP          S   LILGTHT D  PNFL
Sbjct: 21  YKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRVEPPGKDYSVQKLILGTHTSDNEPNFL 80

Query: 201 MLAQV 215
           M+A+V
Sbjct: 81  MIAEV 85



 Score = 52.8 bits (125), Expect(2) = 1e-26
 Identities = 26/45 (57%), Positives = 34/45 (75%)
 Frame = +2

Query: 314 RVQITHQIRLDDSDGEINRARYMPQNPHLIAAKTSASDVCVFDSS 448
           +VQ+  QI   + DGE+NRARYMPQNP +IA KT +++V VFD S
Sbjct: 115 KVQVIQQI---NHDGEVNRARYMPQNPFVIATKTVSAEVFVFDYS 156


>ref|XP_002464182.1| hypothetical protein SORBIDRAFT_01g013730 [Sorghum bicolor]
           gi|241918036|gb|EER91180.1| hypothetical protein
           SORBIDRAFT_01g013730 [Sorghum bicolor]
          Length = 431

 Score = 93.6 bits (231), Expect(2) = 2e-26
 Identities = 47/71 (66%), Positives = 52/71 (73%), Gaps = 11/71 (15%)
 Frame = +3

Query: 51  YKVWKKNTPVLYDLVISHALEWPSLTVQWLP----------SSSSLILGTHTCDGAPNFL 200
           YK+WKKNTP LYDLVI+HALEWPSLTVQWLP          S   +ILGTHT D  PN+L
Sbjct: 27  YKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRTEPPGKDHSVQKMILGTHTSDNEPNYL 86

Query: 201 MLAQV-IHLDD 230
           MLAQV + LDD
Sbjct: 87  MLAQVQLPLDD 97



 Score = 50.8 bits (120), Expect(2) = 2e-26
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = +2

Query: 314 RVQITHQIRLDDSDGEINRARYMPQNPHLIAAKTSASDVCVFDSS 448
           +VQI  QI   + DGE+NRARYMPQN  +IA KT +++V VFD S
Sbjct: 121 KVQIVQQI---NHDGEVNRARYMPQNSFIIATKTVSAEVYVFDYS 162


>ref|NP_001105556.1| MSI type nucleosome/chromatin assembly factor C [Zea mays]
           gi|17017388|gb|AAL33648.1|AF440219_1 MSI type
           nucleosome/chromatin assembly factor C [Zea mays]
           gi|224028465|gb|ACN33308.1| unknown [Zea mays]
          Length = 431

 Score = 93.6 bits (231), Expect(2) = 2e-26
 Identities = 47/71 (66%), Positives = 52/71 (73%), Gaps = 11/71 (15%)
 Frame = +3

Query: 51  YKVWKKNTPVLYDLVISHALEWPSLTVQWLP----------SSSSLILGTHTCDGAPNFL 200
           YK+WKKNTP LYDLVI+HALEWPSLTVQWLP          S   +ILGTHT D  PN+L
Sbjct: 27  YKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRTEPPGKDHSVQKMILGTHTSDNEPNYL 86

Query: 201 MLAQV-IHLDD 230
           MLAQV + LDD
Sbjct: 87  MLAQVQLPLDD 97



 Score = 50.8 bits (120), Expect(2) = 2e-26
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = +2

Query: 314 RVQITHQIRLDDSDGEINRARYMPQNPHLIAAKTSASDVCVFDSS 448
           +VQI  QI   + DGE+NRARYMPQN  +IA KT +++V VFD S
Sbjct: 121 KVQIVQQI---NHDGEVNRARYMPQNSFIIATKTVSAEVYVFDYS 162


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