BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018947
         (1066 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, ...   434   e-119
ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, ...   432   e-119
gb|AFK42470.1| unknown [Lotus japonicus]                              430   e-118
ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, ...   429   e-118
ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Po...   429   e-118

>ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
           vinifera] gi|297738533|emb|CBI27778.3| unnamed protein
           product [Vitis vinifera]
          Length = 259

 Score =  434 bits (1115), Expect = e-119
 Identities = 209/261 (80%), Positives = 221/261 (84%), Gaps = 1/261 (0%)
 Frame = +2

Query: 110 MALSIASTAVANLPLRE-SRQHVGRACIRVCARLRRTNVQATKGVSSVCVPLPPDRPLWF 286
           MALSIASTA ++LP RE S +H  R          R  + ATKGVSSVC PLPPDRPLWF
Sbjct: 1   MALSIASTAFSSLPTREVSSKHFPRKLTTWLPG--RVRLNATKGVSSVCEPLPPDRPLWF 58

Query: 287 PGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELIHGRWAMLAVSGILIPEWLES 466
           PGSSPPEWLDGSLPGDFGFDPLGLGSDPE LRWFAQAEL+H RWAMLAV+GILIPE LE 
Sbjct: 59  PGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILIPECLER 118

Query: 467 LGFIEKFSWYEAGTLEYFTDTTTLFVVQLVLMGWVEGRRWADLVNPGCVDIDLKLPNRKN 646
           LGFIE FSWY+AG  E+F D TTLFVVQL LMGWVEGRRWADL+NPGCVDI L  PN+  
Sbjct: 119 LGFIENFSWYDAGAQEFFADPTTLFVVQLALMGWVEGRRWADLINPGCVDIQLTFPNKAK 178

Query: 647 PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPIE 826
           P PDVGYPGG WFDP MWGRGSPEPVMVLRTKEIKNGRLAMLAF+GF FQAIYTGE PIE
Sbjct: 179 PKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGEGPIE 238

Query: 827 NLMAHIADPGHCNIFSAFTSQ 889
           NLMAHIADPGHCN+FSAFTSQ
Sbjct: 239 NLMAHIADPGHCNVFSAFTSQ 259


>ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
           [Glycine max]
          Length = 260

 Score =  432 bits (1110), Expect = e-119
 Identities = 204/259 (78%), Positives = 224/259 (86%), Gaps = 1/259 (0%)
 Frame = +2

Query: 110 MALSIASTAVANLPLRESRQHVGRACIRVCARL-RRTNVQATKGVSSVCVPLPPDRPLWF 286
           MAL+++STA+++LP RE RQ         C  L RRT   ATKGVS+VC PLPPDRPLWF
Sbjct: 1   MALALSSTALSSLPNREIRQKGFPERTPTCLSLTRRTIANATKGVSAVCEPLPPDRPLWF 60

Query: 287 PGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELIHGRWAMLAVSGILIPEWLES 466
           PGSSPPEWLDGSLPGDFGFDPLGLGSDPE L+WFAQAEL+H RWAMLAV GIL+PE LE 
Sbjct: 61  PGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILVPELLER 120

Query: 467 LGFIEKFSWYEAGTLEYFTDTTTLFVVQLVLMGWVEGRRWADLVNPGCVDIDLKLPNRKN 646
           +G+IE FSWY+AGT EYF D TTLFVVQ+ LMGWVEGRRWAD+VNPG VDI+ K+P+  N
Sbjct: 121 IGYIENFSWYDAGTREYFVDPTTLFVVQMGLMGWVEGRRWADIVNPGSVDIEPKVPHVTN 180

Query: 647 PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPIE 826
           P PDVGYPGG WFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAF+GFWFQAIYTGE PIE
Sbjct: 181 PKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIE 240

Query: 827 NLMAHIADPGHCNIFSAFT 883
           NLMAH+ADPGHCNIFSAFT
Sbjct: 241 NLMAHLADPGHCNIFSAFT 259


>gb|AFK42470.1| unknown [Lotus japonicus]
          Length = 259

 Score =  430 bits (1106), Expect = e-118
 Identities = 204/261 (78%), Positives = 221/261 (84%), Gaps = 1/261 (0%)
 Frame = +2

Query: 110 MALSIASTAVANLPLRESRQHVGRACIRVCARL-RRTNVQATKGVSSVCVPLPPDRPLWF 286
           MALSI+STA++  P  E R  V     R    L RR +  A KGVS VC PLPPDRPLWF
Sbjct: 1   MALSISSTALSTFPNTEKRHKVFPE--RTATWLPRRIHTNAKKGVSDVCEPLPPDRPLWF 58

Query: 287 PGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELIHGRWAMLAVSGILIPEWLES 466
           PGSSPPEWLDGSLPGDFGFDP+GLGSDPE L+W AQAEL+H RWAML VSGILIPE LE 
Sbjct: 59  PGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELLEK 118

Query: 467 LGFIEKFSWYEAGTLEYFTDTTTLFVVQLVLMGWVEGRRWADLVNPGCVDIDLKLPNRKN 646
           +G++E +SWYEAGT EYF D TTLF+VQL LMGWVEGRRWADLVNPG VDI+ KLPNR N
Sbjct: 119 MGYVENYSWYEAGTQEYFADPTTLFIVQLALMGWVEGRRWADLVNPGSVDIEPKLPNRPN 178

Query: 647 PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPIE 826
           P PDVGYPGG WFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAF+GFWFQAIYTG+ PIE
Sbjct: 179 PKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQGPIE 238

Query: 827 NLMAHIADPGHCNIFSAFTSQ 889
           NLMAH+ADPGHCNIFSAFTS+
Sbjct: 239 NLMAHLADPGHCNIFSAFTSR 259


>ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
           [Glycine max]
          Length = 260

 Score =  429 bits (1104), Expect = e-118
 Identities = 203/259 (78%), Positives = 223/259 (86%), Gaps = 1/259 (0%)
 Frame = +2

Query: 110 MALSIASTAVANLPLRESRQHVGRACIRVCARL-RRTNVQATKGVSSVCVPLPPDRPLWF 286
           MAL+++STA+++LP RE RQ         C  L RRT   ATKGVS+VC PLPPDRPLWF
Sbjct: 1   MALALSSTALSSLPNREIRQKGFPDRTPTCLSLTRRTVAYATKGVSAVCEPLPPDRPLWF 60

Query: 287 PGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELIHGRWAMLAVSGILIPEWLES 466
           PGSSPPEWLDGSLPGDFGFDPLGLGSDPE L+WFAQAEL+H RWAMLAV GIL+PE LE 
Sbjct: 61  PGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFGILVPELLEK 120

Query: 467 LGFIEKFSWYEAGTLEYFTDTTTLFVVQLVLMGWVEGRRWADLVNPGCVDIDLKLPNRKN 646
           +G+IE FSWY+AG  EYF D TTLFVVQ+ LMGWVEGRRWAD+VNPG VDI+ K+P+  N
Sbjct: 121 IGYIENFSWYDAGAREYFVDPTTLFVVQMGLMGWVEGRRWADMVNPGSVDIEPKVPHITN 180

Query: 647 PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPIE 826
           P PDVGYPGG WFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAF+GFWFQAIYTGE PIE
Sbjct: 181 PKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIE 240

Query: 827 NLMAHIADPGHCNIFSAFT 883
           NLMAH+ADPGHCNIFSAFT
Sbjct: 241 NLMAHLADPGHCNIFSAFT 259


>ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
           gi|222833488|gb|EEE71965.1| light-harvesting complex I
           protein Lhca6 [Populus trichocarpa]
          Length = 261

 Score =  429 bits (1104), Expect = e-118
 Identities = 199/261 (76%), Positives = 223/261 (85%), Gaps = 2/261 (0%)
 Frame = +2

Query: 110 MALSIASTAVANLPLR--ESRQHVGRACIRVCARLRRTNVQATKGVSSVCVPLPPDRPLW 283
           MAL+ AS+++++LP R  +  Q      I  C  ++   V ATKGVSSVC PLPPDRPLW
Sbjct: 1   MALNFASSSLSSLPTRTRDKPQKSLLGKIEKCQAVK-VRVNATKGVSSVCEPLPPDRPLW 59

Query: 284 FPGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELIHGRWAMLAVSGILIPEWLE 463
           FPGSSPPEWLDGSLPGDFGFDPLGLGSDPE L+WFAQAELIHGRWAMLA +GILIPEWLE
Sbjct: 60  FPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILIPEWLE 119

Query: 464 SLGFIEKFSWYEAGTLEYFTDTTTLFVVQLVLMGWVEGRRWADLVNPGCVDIDLKLPNRK 643
            LGFI+ F+W++AGT EYF D TTLFVVQL+LMGW+EGRRWAD++ PGCVDID KLP++ 
Sbjct: 120 RLGFIDNFNWFDAGTREYFADPTTLFVVQLILMGWIEGRRWADMIKPGCVDIDPKLPHKT 179

Query: 644 NPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPI 823
            P PDVGYPGG WFDP  WGRGSPEPVM +RTKEIKNGRLAMLAF+GFWFQAIYTGE PI
Sbjct: 180 KPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLAFVGFWFQAIYTGEGPI 239

Query: 824 ENLMAHIADPGHCNIFSAFTS 886
           +NLMAHIADPGHCNIFSAFTS
Sbjct: 240 DNLMAHIADPGHCNIFSAFTS 260