BLASTX nr result
ID: Coptis21_contig00018845
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00018845
(1180 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003607639.1| F-box/LRR-repeat protein [Medicago truncatul... 75 4e-11
ref|XP_003588676.1| F-box/FBD/LRR-repeat protein [Medicago trunc... 72 4e-10
ref|XP_002302466.1| predicted protein [Populus trichocarpa] gi|2... 69 2e-09
ref|NP_001189735.1| F-box protein [Arabidopsis thaliana] gi|1222... 67 9e-09
ref|NP_181801.1| F-box protein [Arabidopsis thaliana] gi|4512680... 67 9e-09
>ref|XP_003607639.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355508694|gb|AES89836.1| F-box/LRR-repeat protein
[Medicago truncatula]
Length = 467
Score = 74.7 bits (182), Expect = 4e-11
Identities = 84/303 (27%), Positives = 132/303 (43%), Gaps = 18/303 (5%)
Frame = +3
Query: 120 SLPTIVKFPVLKSLLLDDVAIPGENLVNKLLSSSTCPVLEKLVIWYCCCIGINSFNTISI 299
S+P + FP LK L V E +L S CPVL+ L C + IN IS+
Sbjct: 163 SVPDGICFPSLKILSFAHVTFTNEKSAQRLFSG--CPVLQDLSFEKCYWVNIN----ISV 216
Query: 300 SLPTLKYLTLF------DTHELTINLFNTVLRELIYMCCKPPNIIYENVLSVVSAKLHFS 461
++PTLK L +F D + + L L Y N N S+V A +
Sbjct: 217 AIPTLKKLDIFFRSSSLDRNSCMFKIDAVNLLSLSYKSNPTINCFLVNSTSIVDA----N 272
Query: 462 VDIGLCGTPVDSFFRSASKILVWLR--NVEKLCLMSGFIEFLSMDQEFLAGVPSSCCSLK 635
+D+G + + I ++ R +VE L L I+ L+ + L +PS K
Sbjct: 273 IDLGFFCVQNNELHVAVFAIELFSRLGSVESLRLSDQTIQCLNYAKSALHLLPS----FK 328
Query: 636 HL-HVDMFASEKHAQVITLLSRSYPNLQTLSIIVEDLYDKATISNMANVE---ECWKPTQ 803
+L +++ + +V+ + R P L+ L I L + S+ + + E W
Sbjct: 329 NLTRLEVHFDDPSCEVLADILRKSPKLEFLHIYGVHLVSCSRFSSGSYLSLDSEDWTSDS 388
Query: 804 LLSEDILNGLKTVDIEGFKGSDGELYVVRFLLENAKILEKMNI------CYSDEKLETVR 965
L + LK+ DI F+G + E+ +V+FLLEN +L +MNI +KL VR
Sbjct: 389 LPC-CFKSSLKSCDISDFRGDEAEIRLVKFLLENVTLLREMNIYCTGYLSKKSKKLADVR 447
Query: 966 CQM 974
Q+
Sbjct: 448 NQL 450
>ref|XP_003588676.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
gi|355477724|gb|AES58927.1| F-box/FBD/LRR-repeat protein
[Medicago truncatula]
Length = 428
Score = 71.6 bits (174), Expect = 4e-10
Identities = 86/315 (27%), Positives = 140/315 (44%), Gaps = 5/315 (1%)
Frame = +3
Query: 3 KHNVQDFKFSSYTWRFKKLP*CLFXXXXXXXXXXYTVELSLP-TIVKFPVLKSLLLDDVA 179
K ++++ + K+P CLF Y L P TI LKSL LD V+
Sbjct: 115 KRSIKELVLQISERKLYKIPWCLFSCQSLHHLTLYYCLLKPPSTIEGLKNLKSLDLDHVS 174
Query: 180 IPG---ENLVNKLLSSSTCPVLEKLVIWYCCCIGINSFNTISISLPTLKYLTLFDTHELT 350
+ ENL+ S+CP+LE L + ++ F I+I P LK L + E
Sbjct: 175 MSQYAFENLI------SSCPLLENLTL-----TELDGFTQINIHAPNLKVLDICGKFE-D 222
Query: 351 INLFNTVLRELIYMCCKPPNIIYENVLSVVSAKLHFSVDIGLCGTPVDSFFRSASKILVW 530
I+ NT + +++ +Y N S S +LH G+P +
Sbjct: 223 ISFDNTFQLDYVFVDLS----LYLNSESNQS-RLH--------GSPSNLL-----NFFAH 264
Query: 531 LRNVEKLCLMSGFIEFLSMDQEFLAGVPSSCCSLKHLHVDM-FASEKHAQVITLLSRSYP 707
L ++ L + F+++L+ + +P+ C +L +L + F K + RS P
Sbjct: 265 LHHIHGLVINGYFLKYLAAGAVPVK-LPTPCINLTYLWFSINFYDFKEISTALCVFRSSP 323
Query: 708 NLQTLSIIVEDLYDKATISNMANVEECWKPTQLLSEDILNGLKTVDIEGFKGSDGELYVV 887
NL+ L+I + ++K TI +A CW+ L +L ++ V IEG G EL +
Sbjct: 324 NLKELNIFAK--HEKKTIV-LAPAFFCWEDI-FLEPSMLTRVRHVGIEGISGIKSELDFM 379
Query: 888 RFLLENAKILEKMNI 932
RFLL ++ +LEKM +
Sbjct: 380 RFLLLHSPVLEKMRV 394
>ref|XP_002302466.1| predicted protein [Populus trichocarpa] gi|222844192|gb|EEE81739.1|
predicted protein [Populus trichocarpa]
Length = 505
Score = 68.9 bits (167), Expect = 2e-09
Identities = 81/317 (25%), Positives = 143/317 (45%), Gaps = 9/317 (2%)
Frame = +3
Query: 9 NVQDFKFSSYTWRFKKLP*CLFXXXXXXXXXXYTVELSLPTIVK-FPVLKSLLLDDVAIP 185
+ ++F + + KLP CLF + L P K F LK+L L V +
Sbjct: 200 STKEFVLEIWKGQQYKLPSCLFSFKNLVYLELFNCLLKPPLAFKGFRNLKNLDLQHVTLA 259
Query: 186 GENLVNKLLSSSTCPVLEKLVIWYCCCIGINSFNTISISLPTLKYLTLFDTHELTINLFN 365
E + KL+SS C +LE+L + I + F ++I+ P L++ + +
Sbjct: 260 QE-VFEKLISS--CAMLERLTL-----INFDGFTHLNINAPNLQFFDVGGVFD------- 304
Query: 366 TVLRELIYMCCKPPNIIYEN--VLSVVSAKLHFSVDIGLCGTPVDSFFRSASKIL---VW 530
++ +EN VL++VS L+ +V + + S+SK+L V
Sbjct: 305 --------------DVSFENTFVLALVSIGLYVNVK-----NDQNVSYGSSSKLLRFFVN 345
Query: 531 LRNVEKLCLMSGFIEFLSMDQEFLAGVPSSCCSLKHLHVDM-FASEKHAQVITLLSRSYP 707
L +V +L + S F+++L++ + + +P C L +L + + F + L RS P
Sbjct: 346 LPHVRRLEIQSYFLKYLAIGK-VPSKLPKPCIDLNYLSIRLNFNDYEENSAAFCLLRSCP 404
Query: 708 NLQTLSIIVEDLYDKATISNMANV--EECWKPTQLLSEDILNGLKTVDIEGFKGSDGELY 881
NLQ + I+ ++A + + + ++ WK + L+ V I G G EL
Sbjct: 405 NLQEIEILARP-EEQAVVGPVTDFWDDDHWKC-------LFGQLRLVKIVGISGIRSELD 456
Query: 882 VVRFLLENAKILEKMNI 932
++FLL N+ +LEKM I
Sbjct: 457 CIKFLLSNSPVLEKMTI 473
>ref|NP_001189735.1| F-box protein [Arabidopsis thaliana]
gi|122223784|sp|Q0WR05.1|FBL39_ARATH RecName:
Full=F-box/LRR-repeat protein At2g42730
gi|110736977|dbj|BAF00444.1| hypothetical protein
[Arabidopsis thaliana] gi|330255068|gb|AEC10162.1| F-box
protein [Arabidopsis thaliana]
Length = 457
Score = 67.0 bits (162), Expect = 9e-09
Identities = 86/312 (27%), Positives = 151/312 (48%), Gaps = 14/312 (4%)
Frame = +3
Query: 105 YTVELSLPTIVKFPVLKSLLLDDVA-IPGENLVNKLLSSSTCPVLEKLVIWYCCCIGINS 281
+T++LS V P+L++L LD V + G N+V L+S CPVLE+LV+ C+
Sbjct: 152 FTIKLSQD--VSLPLLRTLCLDSVNFVGGHNVVGTLISR--CPVLEELVVEERRCVDW-- 205
Query: 282 FNTISISLPTLKYLTL-FDTHELTINLFNTVL---RELIYMCCKPPNIIYENVLSVVSAK 449
T S+S P+LK L + FD +I+L L + Y+ K PN+ + S++ A+
Sbjct: 206 --TCSVSSPSLKRLHIRFDRKFTSISLDAPNLIYYKHSGYVLGKYPNVKLD---SLIEAR 260
Query: 450 LHFSVD----IGLCGTPVDSFFRSASKILVWLRNVEKLCLMSGFIEFLSMDQEFLAGVPS 617
L+ +D +G+ + S ++ +RNV L L S +E L + + +
Sbjct: 261 LNLRMDETRMVGVRNGSLGSIPADMRNLINGIRNVRILHLSSHTLELLYFSCKEMP-LFD 319
Query: 618 SCCSLKHLHVDMFASEKHA--QVITLLSRSYPNLQTLSIIVEDLYDKATISNMANVEECW 791
S SL ++K Q++ LL ++ PNL+TL + D Y + +V C+
Sbjct: 320 SLVSLS------IGNDKARGWQMLPLLIKNSPNLETLIFMGLDHY---ITNRCGDVCVCY 370
Query: 792 KPTQLLSEDILNG-LKTVDIEGFKGSDGELYVVRFLLENAKILEKMNICY--SDEKLETV 962
+ ++ + + +K ++I ++G+ EL ++ LE LE + IC + L+T
Sbjct: 371 DTDESITSCLSSSQVKVLEILSYQGTTRELNQMKHFLEKLPCLELVKICVVNNSNNLQTT 430
Query: 963 RCQMCITEMLPK 998
+M MLP+
Sbjct: 431 -MEMRNLMMLPR 441
>ref|NP_181801.1| F-box protein [Arabidopsis thaliana] gi|4512680|gb|AAD21734.1|
hypothetical protein [Arabidopsis thaliana]
gi|330255067|gb|AEC10161.1| F-box protein [Arabidopsis
thaliana]
Length = 737
Score = 67.0 bits (162), Expect = 9e-09
Identities = 86/312 (27%), Positives = 151/312 (48%), Gaps = 14/312 (4%)
Frame = +3
Query: 105 YTVELSLPTIVKFPVLKSLLLDDVA-IPGENLVNKLLSSSTCPVLEKLVIWYCCCIGINS 281
+T++LS V P+L++L LD V + G N+V L+S CPVLE+LV+ C+
Sbjct: 152 FTIKLSQD--VSLPLLRTLCLDSVNFVGGHNVVGTLISR--CPVLEELVVEERRCVDW-- 205
Query: 282 FNTISISLPTLKYLTL-FDTHELTINLFNTVL---RELIYMCCKPPNIIYENVLSVVSAK 449
T S+S P+LK L + FD +I+L L + Y+ K PN+ + S++ A+
Sbjct: 206 --TCSVSSPSLKRLHIRFDRKFTSISLDAPNLIYYKHSGYVLGKYPNVKLD---SLIEAR 260
Query: 450 LHFSVD----IGLCGTPVDSFFRSASKILVWLRNVEKLCLMSGFIEFLSMDQEFLAGVPS 617
L+ +D +G+ + S ++ +RNV L L S +E L + + +
Sbjct: 261 LNLRMDETRMVGVRNGSLGSIPADMRNLINGIRNVRILHLSSHTLELLYFSCKEMP-LFD 319
Query: 618 SCCSLKHLHVDMFASEKHA--QVITLLSRSYPNLQTLSIIVEDLYDKATISNMANVEECW 791
S SL ++K Q++ LL ++ PNL+TL + D Y + +V C+
Sbjct: 320 SLVSLS------IGNDKARGWQMLPLLIKNSPNLETLIFMGLDHY---ITNRCGDVCVCY 370
Query: 792 KPTQLLSEDILNG-LKTVDIEGFKGSDGELYVVRFLLENAKILEKMNICY--SDEKLETV 962
+ ++ + + +K ++I ++G+ EL ++ LE LE + IC + L+T
Sbjct: 371 DTDESITSCLSSSQVKVLEILSYQGTTRELNQMKHFLEKLPCLELVKICVVNNSNNLQTT 430
Query: 963 RCQMCITEMLPK 998
+M MLP+
Sbjct: 431 -MEMRNLMMLPR 441