BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018791
         (217 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               45   4e-06

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 45.4 bits (106), Expect(2) = 4e-06
 Identities = 22/43 (51%), Positives = 28/43 (65%)
 Frame = +3

Query: 33   REQVTNKVLQLQYVCTEDQVADILTKGLSTTRYSMLQQRLNVR 161
            R++V  + L + YV T DQ ADI TKGLST R+  L  +L VR
Sbjct: 1324 RDKVVRQELAVSYVSTADQTADIFTKGLSTQRFQFLASKLPVR 1366



 Score = 30.0 bits (66), Expect(2) = 4e-06
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +1

Query: 1    TKHIEVDFHYIENKLL 48
            TKHIEVD+HY+ +K++
Sbjct: 1313 TKHIEVDYHYVRDKVV 1328