BLASTX nr result

ID: Coptis21_contig00018784 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018784
         (217 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282882.2| PREDICTED: syntaxin-43-like [Vitis vinifera]...    63   3e-08
ref|XP_002512481.1| syntaxin, putative [Ricinus communis] gi|223...    61   8e-08
dbj|BAH03478.1| syntaxin [Nicotiana tabacum]                           59   3e-07
ref|XP_004158729.1| PREDICTED: syntaxin-43-like [Cucumis sativus]      59   5e-07
ref|XP_004144767.1| PREDICTED: syntaxin-43-like [Cucumis sativus]      59   5e-07

>ref|XP_002282882.2| PREDICTED: syntaxin-43-like [Vitis vinifera]
           gi|296089745|emb|CBI39564.3| unnamed protein product
           [Vitis vinifera]
          Length = 327

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 37/69 (53%), Positives = 42/69 (60%), Gaps = 8/69 (11%)
 Frame = -3

Query: 185 MATRNRTHLYRKYRDALKSVRVP--------TXXXXXXXXXXXXIEMSSMFPQKRSYVPL 30
           MA+RNRT LYRKYRDALKSVRVP        T            +  +S+    RSYVPL
Sbjct: 1   MASRNRTLLYRKYRDALKSVRVPVSSSLSSSTPSTSSGGGPVIELVSTSLLNPNRSYVPL 60

Query: 29  STEDPGSSS 3
           STEDPG+SS
Sbjct: 61  STEDPGNSS 69


>ref|XP_002512481.1| syntaxin, putative [Ricinus communis] gi|223548442|gb|EEF49933.1|
           syntaxin, putative [Ricinus communis]
          Length = 323

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 35/65 (53%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
 Frame = -3

Query: 185 MATRNRTHLYRKYRDALKSVRVP----TXXXXXXXXXXXXIEMSSMFPQKRSYVPLSTED 18
           MA+RNRT L+RKYRDALKSVRVP    T              +S+   Q RSY PLS ED
Sbjct: 1   MASRNRTFLFRKYRDALKSVRVPSTQSTTTSTSSVSGPVIELVSTSLLQNRSYAPLSAED 60

Query: 17  PGSSS 3
           PG+SS
Sbjct: 61  PGNSS 65


>dbj|BAH03478.1| syntaxin [Nicotiana tabacum]
          Length = 324

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
 Frame = -3

Query: 185 MATRNRTHLYRKYRDALKSVRVPTXXXXXXXXXXXXIEM-----SSMFPQKRSYVPLSTE 21
           MA+RNRT L+RKYRDAL+SVRVP               +     +S+    RSY PLSTE
Sbjct: 1   MASRNRTILFRKYRDALRSVRVPAGSSPSTSSGHGSGPVIELATTSLLNSNRSYAPLSTE 60

Query: 20  DPGSSS 3
           DPG+SS
Sbjct: 61  DPGTSS 66


>ref|XP_004158729.1| PREDICTED: syntaxin-43-like [Cucumis sativus]
          Length = 329

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 34/70 (48%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
 Frame = -3

Query: 185 MATRNRTHLYRKYRDALKSVRVPTXXXXXXXXXXXXIE---------MSSMFPQKRSYVP 33
           MA+RNRT L++KYRDAL+SVRVPT                        SS+    RSY P
Sbjct: 1   MASRNRTLLFKKYRDALRSVRVPTSSSPAFASPSTSSAGGGPVIELVSSSLLHPNRSYAP 60

Query: 32  LSTEDPGSSS 3
           LSTEDPG+SS
Sbjct: 61  LSTEDPGNSS 70


>ref|XP_004144767.1| PREDICTED: syntaxin-43-like [Cucumis sativus]
          Length = 329

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 34/70 (48%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
 Frame = -3

Query: 185 MATRNRTHLYRKYRDALKSVRVPTXXXXXXXXXXXXIE---------MSSMFPQKRSYVP 33
           MA+RNRT L++KYRDAL+SVRVPT                        SS+    RSY P
Sbjct: 1   MASRNRTLLFKKYRDALRSVRVPTSSSPAFASPSTSSAGGGPVIELVSSSLLHPNRSYAP 60

Query: 32  LSTEDPGSSS 3
           LSTEDPG+SS
Sbjct: 61  LSTEDPGNSS 70


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