BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018754
         (546 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   186   2e-45
ref|XP_003571431.1| PREDICTED: DNA-directed RNA polymerase D sub...   179   2e-43
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   179   3e-43
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2...   178   4e-43
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   177   1e-42

>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron
           macrophyllum]
          Length = 1019

 Score =  186 bits (472), Expect = 2e-45
 Identities = 88/179 (49%), Positives = 129/179 (72%), Gaps = 1/179 (0%)
 Frame = +3

Query: 12  ISEEKKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFVVKGAEKAFVAQERISLKRL 191
           ISE+ ++V+IGRIPVM+ S+LCWMNG EK DC+FDHGGYF++KGAEK F+AQE+I LKRL
Sbjct: 8   ISEDNRDVIIGRIPVMLKSDLCWMNGVEKSDCDFDHGGYFLIKGAEKTFIAQEQICLKRL 67

Query: 192 WVVDQPNWSISYRTEIRRQRVDLKIEEVSASECEHLQ-RTKVLNVHFLGCTIPLWVFLFA 368
           WV + P+W+++YR   +R+RV +K+E     + EH++   KVL+V+F     P+W+  FA
Sbjct: 68  WVSNSPSWTVAYRDVSKRKRVYIKLE---PPKREHIRGGEKVLSVYFSAVEFPIWILFFA 124

Query: 369 LGMPSDKEIIEMIDCNLRDESSVKLLLSTISYADDQHEGFRRGGYSSKKIDELIKGTRF 545
           LG  SDKE++ +IDC+  D   V +L+++I  AD+  +GFRRG  +   I + I+  +F
Sbjct: 125 LGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKKIENCKF 183


>ref|XP_003571431.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
           [Brachypodium distachyon]
          Length = 1242

 Score =  179 bits (454), Expect = 2e-43
 Identities = 87/181 (48%), Positives = 126/181 (69%)
 Frame = +3

Query: 3   KVGISEEKKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFVVKGAEKAFVAQERISL 182
           K  I  E K V IGR+PVMV SNLCW++  +K DC+FD+GGYF++KG EKAFVA+E+  L
Sbjct: 227 KRDILNETKWVSIGRLPVMVKSNLCWLHKLQKTDCQFDYGGYFLIKGMEKAFVAEEQRCL 286

Query: 183 KRLWVVDQPNWSISYRTEIRRQRVDLKIEEVSASECEHLQRTKVLNVHFLGCTIPLWVFL 362
            R+W+ D P+W  SY ++ +R+R+ +K+  V + E   L+  K++ + FLG T+P+W+  
Sbjct: 287 SRIWIKDHPSWDASYMSQNKRERIYVKL--VQSEESHGLR--KLVRLFFLGATMPIWIMF 342

Query: 363 FALGMPSDKEIIEMIDCNLRDESSVKLLLSTISYADDQHEGFRRGGYSSKKIDELIKGTR 542
           FALG+ SDKE  +MID    D S V ++ +TI  +D+Q EGFRRGG + + +DE IK T+
Sbjct: 343 FALGVSSDKEAFDMIDIQDCDASLVNIISATIKESDEQCEGFRRGGRARQYVDEFIKKTK 402

Query: 543 F 545
           F
Sbjct: 403 F 403


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  179 bits (453), Expect = 3e-43
 Identities = 84/179 (46%), Positives = 127/179 (70%), Gaps = 1/179 (0%)
 Frame = +3

Query: 12  ISEEKKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFVVKGAEKAFVAQERISLKRL 191
           + E+K++V IGRIPVMV S LCWM+G ++ DCEFDHGGYF+VKGAEK F+AQE+I LKRL
Sbjct: 207 VMEDKRDVFIGRIPVMVNSELCWMSGADRPDCEFDHGGYFIVKGAEKIFIAQEQICLKRL 266

Query: 192 WVVDQPNWSISYRTEIRRQRVDLKIEEVSASECEHLQ-RTKVLNVHFLGCTIPLWVFLFA 368
           WV +   W ++YR+  +R RV LK+ E    + EH++   K L+V+F    +P+WV  FA
Sbjct: 267 WVSNHSTWMVAYRSGEKRNRVYLKLTE--TLKHEHIKGEAKALSVYFF-AEMPIWVLFFA 323

Query: 369 LGMPSDKEIIEMIDCNLRDESSVKLLLSTISYADDQHEGFRRGGYSSKKIDELIKGTRF 545
           LG+ SD+E++++ID +++D + + +L+++I  AD   E FR+G  +   +D L+K  +F
Sbjct: 324 LGVSSDREVVDLIDVDIKDTNIINILVASIHDADKNCEDFRKGKKALAYVDRLVKSCKF 382


>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
           predicted protein [Populus trichocarpa]
          Length = 1160

 Score =  178 bits (452), Expect = 4e-43
 Identities = 84/179 (46%), Positives = 128/179 (71%), Gaps = 1/179 (0%)
 Frame = +3

Query: 12  ISEEKKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFVVKGAEKAFVAQERISLKRL 191
           +  E +E++IGRIPVMV S+LCW+   EK DC+FDHGGYF++KGAEK F+AQE+I +KRL
Sbjct: 159 VHTENREIIIGRIPVMVKSDLCWLTTVEKGDCDFDHGGYFLIKGAEKVFIAQEQICMKRL 218

Query: 192 WVVDQPNWSISYRTEIRRQRVDLKIEEVSASECEHLQ-RTKVLNVHFLGCTIPLWVFLFA 368
           W+ +   W++SY++E++R R+ +++ E+  S+ E+++   K L V+FL   IPLW+  FA
Sbjct: 219 WISNSQGWTVSYKSEVKRNRLIVRLVEL--SKLEYIKGEKKGLCVYFLSTEIPLWILFFA 276

Query: 369 LGMPSDKEIIEMIDCNLRDESSVKLLLSTISYADDQHEGFRRGGYSSKKIDELIKGTRF 545
           LG+ SDKE+I++ID    D S V +  ++I  AD++ E FRR   +   +D+L+K TRF
Sbjct: 277 LGVRSDKEVIDLIDYASNDASIVNIFFASIHDADEKCEHFRREDRALDYVDKLLKKTRF 335


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  177 bits (448), Expect = 1e-42
 Identities = 86/177 (48%), Positives = 123/177 (69%), Gaps = 1/177 (0%)
 Frame = +3

Query: 18  EEKKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFVVKGAEKAFVAQERISLKRLWV 197
           E K++V+IGRIPVMV S LCWMNG +K DCEFDHGGYF+ KGAEK F+AQE++ LKRLWV
Sbjct: 203 EGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGYFIAKGAEKTFIAQEQLCLKRLWV 262

Query: 198 VDQPNWSISYRTEIRRQRVDLKIEEVSASECEHLQ-RTKVLNVHFLGCTIPLWVFLFALG 374
            + P W + YR   +R+RV +K+ E    + EH++   K L+V+ L   +P+WV  FALG
Sbjct: 263 SNNPTWMVGYRPGEKRKRVYIKLTE--TLKLEHIKGGEKALSVYIL-AEMPIWVLFFALG 319

Query: 375 MPSDKEIIEMIDCNLRDESSVKLLLSTISYADDQHEGFRRGGYSSKKIDELIKGTRF 545
           + SD+E++ +ID ++ D + V +L+++I  AD   E FR+G  +   +D LIK  +F
Sbjct: 320 VSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKF 376