BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018672
         (1285 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519191.1| pentatricopeptide repeat-containing protein,...   496   e-138
ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat...   465   e-128
ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   446   e-123
ref|XP_002885175.1| pentatricopeptide repeat-containing protein ...   430   e-118
ref|NP_188314.1| pentatricopeptide repeat-containing protein [Ar...   428   e-117

>ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223541506|gb|EEF43055.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 719

 Score =  496 bits (1277), Expect = e-138
 Identities = 239/384 (62%), Positives = 301/384 (78%)
 Frame = +3

Query: 129  TGKSPFNLSNHRILPNVHKLPVNVIDHSYLSEILARNDWFYLLNHEFKAKRASLNQQYVV 308
            T  +   +SN+ I  N +  P   IDH Y S IL+R+DWF LLNHEFKAKR +LN   V 
Sbjct: 61   TNPNSLKISNNPISANKYSKP---IDHHYFSRILSRHDWFLLLNHEFKAKRITLNSHSVA 117

Query: 309  RVLQNEENPLGCVRFYVWVSNVEDRLAKDQLVQRVLGNRLYRNGPVVLSADLIKEVVGFK 488
             VLQN+ENPL  ++FY+WVSN++   AKDQ V+ VL N LYR GPVVLS +L+K++    
Sbjct: 118  SVLQNQENPLYPLKFYIWVSNMDPLFAKDQSVKGVLANCLYRKGPVVLSVELLKDIKASG 177

Query: 489  CRITEEIVCVMIGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAY 668
             RI EE++C++IGSWGRLGLAKYC E+FGQIS+LG+SP+TRLYNAVIDALVKSNSLDLAY
Sbjct: 178  YRINEELLCILIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAY 237

Query: 669  FKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGF 848
             KFQQM ADNC PDRFTYNILIHGVC+ G+VDEALRL+KQMEG GYSPNVFTYTILIDGF
Sbjct: 238  LKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGF 297

Query: 849  CNAKRVDEAFQLLETMREKNVAPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSK 1028
             NAK+VDEAF++LETM+ + V+PSEAT RS +HGVFRC+   +A++L + F+ REP++ +
Sbjct: 298  FNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQR 357

Query: 1029 HACDTILICLAKNSLSREAADILRMMGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNG 1208
             ACDT+L CL+  +++REA  +L+  GK G+ PDSATF+I M C  K  +L+E CNI++ 
Sbjct: 358  LACDTLLCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDR 417

Query: 1209 FTEHGGMLGFNTYIALIKSLFKAG 1280
            F E G   GF+TY+ALIK+L+ AG
Sbjct: 418  FVEQGMKFGFSTYLALIKALYMAG 441



 Score = 94.7 bits (234), Expect = 4e-17
 Identities = 54/185 (29%), Positives = 91/185 (49%)
 Frame = +3

Query: 591  GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 770
            G  P    ++++ID L ++  ++ A   F +M      P+  TYNILIH +C IG V  +
Sbjct: 527  GFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRS 586

Query: 771  LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 950
            ++LL++M+  G +P+VF++  LI  FC   +V++A +L  +M    + P   TY + +  
Sbjct: 587  MKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKV 646

Query: 951  VFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMMGKKGYIPD 1130
              +     EA +LFLS      +     C+ IL  L K      A  I +   + G + +
Sbjct: 647  FCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVN 706

Query: 1131 SATFS 1145
             A  S
Sbjct: 707  FAAIS 711



 Score = 87.8 bits (216), Expect = 5e-15
 Identities = 68/299 (22%), Positives = 120/299 (40%), Gaps = 7/299 (2%)
 Frame = +3

Query: 363  VSNVEDRLAKDQL-----VQRVLGNRLYRNGPVVLSADLIKEVV--GFKCRITEEIVCVM 521
            V N+ DR  +  +         L   LY  G V        ++V  G  C +      ++
Sbjct: 411  VCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCS--YNMV 468

Query: 522  IGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNC 701
            I  + +  +    T  F ++ Y G+ P    +N +ID   K   +  +      +     
Sbjct: 469  IDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGF 528

Query: 702  VPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQ 881
             PD FT++ +I G+C+   +++AL    +M   G SPN  TY ILI   C    V  + +
Sbjct: 529  KPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMK 588

Query: 882  LLETMREKNVAPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLA 1061
            LL  M+   + P   ++ +L+    R   + +A  LF S +    I   +     +    
Sbjct: 589  LLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFC 648

Query: 1062 KNSLSREAADILRMMGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEHGGMLGF 1238
            ++    EA ++   M   G +PDS T +I++    K         I    +E G ++ F
Sbjct: 649  QSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVNF 707



 Score = 85.5 bits (210), Expect = 3e-14
 Identities = 62/237 (26%), Positives = 102/237 (43%)
 Frame = +3

Query: 570  FGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCK 749
            F Q+   GL      YN VID   K++ +D A   F++M      P+  T+N LI G CK
Sbjct: 450  FNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCK 509

Query: 750  IGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEAT 929
             G + ++  LL  +   G+ P++FT++ +IDG C AK++++A      M    ++P+  T
Sbjct: 510  GGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVT 569

Query: 930  YRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMMG 1109
            Y  L+H               L  +G  P   K                     +LR M 
Sbjct: 570  YNILIHS--------------LCIIGDVPRSMK---------------------LLRKMQ 594

Query: 1110 KKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEHGGMLGFNTYIALIKSLFKAG 1280
              G  PD  +F+ L+  F +   + +   + +     G +    TY+A IK   ++G
Sbjct: 595  TDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSG 651


>ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score =  465 bits (1197), Expect = e-128
 Identities = 230/409 (56%), Positives = 298/409 (72%), Gaps = 5/409 (1%)
 Frame = +3

Query: 69   SPYNR-KKPDASKLTSSKAPVTGKSPFNLSNHRILPN-VHKLPVNVIDHSYLSEILARND 242
            SP+N  + P     +    P+   S   LS    L +  H L +  ID SY+S+IL   D
Sbjct: 45   SPFNNLEAPSRGNPSPLTTPLKAPSSIQLSTPPSLADDKHSLSLKPIDRSYISKILLSKD 104

Query: 243  WFYLLNHEFKAKRASLNQQYVVRVLQNEENPLGCVRFYVWVSNVEDRLAKDQLVQRVLGN 422
            WF LLNHEFKAKR  L+ Q+VV +LQN++NPL  +RFY+WVSNV+  L K QL+Q VL  
Sbjct: 105  WFLLLNHEFKAKRVVLSPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQLIQGVLVR 164

Query: 423  RLYRNGP---VVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYCTEVFGQISYLG 593
             L+R GP   V+LS DL++++     ++TEE++C++ GSWGRLGLA YC EVFGQI  LG
Sbjct: 165  NLHREGPDRPVLLSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLLG 224

Query: 594  LSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEAL 773
            L+PTTRLYNAV+DAL+KSNSLDLAY KFQQM + NCVPDRFTYNILIHGVC++G+VDEAL
Sbjct: 225  LNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEAL 284

Query: 774  RLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHGV 953
            RL+KQMEG GY PNVFTYTILIDGF NAKR  EAF++L+TM+E+NV P+EAT RSLVHGV
Sbjct: 285  RLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRSLVHGV 344

Query: 954  FRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMMGKKGYIPDS 1133
            FRC+   +A++L L FV R+  +++  CD IL CL+ NS++ EA   L   GK+GY+P S
Sbjct: 345  FRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFLIKTGKEGYVPSS 404

Query: 1134 ATFSILMVCFTKDLNLHETCNIVNGFTEHGGMLGFNTYIALIKSLFKAG 1280
            +TF+I + C  K L+L  TC + +   + G   GF+TY+ LI++L+KAG
Sbjct: 405  STFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAG 453



 Score =  100 bits (249), Expect = 8e-19
 Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 2/250 (0%)
 Frame = +3

Query: 537  RLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRF 716
            +L L   CT VF      G+ P    Y  +I+AL K+  +++      ++  D  + + +
Sbjct: 417  KLDLKVTCT-VFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIY 475

Query: 717  TYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETM 896
            +YN++I  +CK   +D A  + + +   G SPN+ TY  LI GFC    +D+A +LLE +
Sbjct: 476  SYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEML 535

Query: 897  REKNVAPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILIC--LAKNS 1070
             E    P   T+ SL+ G+ +      A+  F   V  + +        ILIC   A   
Sbjct: 536  LESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWD-VPPNVITYNILICSFCAIGD 594

Query: 1071 LSREAADILRMMGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEHGGMLGFNTYI 1250
            +SR +  +LR M   G  PD+ +F+ L+  +T      +   + +     G      TY 
Sbjct: 595  VSR-STHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYG 653

Query: 1251 ALIKSLFKAG 1280
            ALIKSL K+G
Sbjct: 654  ALIKSLCKSG 663



 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 53/196 (27%), Positives = 87/196 (44%)
 Frame = +3

Query: 561  TEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHG 740
            +E+F  +   G+SP    YN +I    ++ ++D A    + +      PD FT+N LI G
Sbjct: 494  SEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDG 553

Query: 741  VCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPS 920
            +C+    + A     +M      PNV TY ILI  FC    V  +  LL  M+   + P 
Sbjct: 554  LCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPD 613

Query: 921  EATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILR 1100
              ++ +L+ G       ++A  LF S +        +    ++  L K+    +A +I  
Sbjct: 614  TFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFL 673

Query: 1101 MMGKKGYIPDSATFSI 1148
             M + G  PDS T S+
Sbjct: 674  SMKENGCTPDSYTCSL 689



 Score = 78.6 bits (192), Expect = 3e-12
 Identities = 69/299 (23%), Positives = 135/299 (45%), Gaps = 2/299 (0%)
 Frame = +3

Query: 108  TSSKAPVTGKSPFNLSNHRILPNVH-KLPVNVIDHSYLSEILAR-NDWFYLLNHEFKAKR 281
            T  +  V   S FN++   +L  +  K+   V D+   S +    + +  L+   +KA +
Sbjct: 395  TGKEGYVPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGK 454

Query: 282  ASLNQQYVVRVLQNEENPLGCVRFYVWVSNVEDRLAKDQLVQRVLGNRLYRNGPVVLSAD 461
              +  +Y+ R++ +     G +      + V D L K + + R   + ++R+   + +  
Sbjct: 455  MEIGNRYMDRLIND-----GLISNIYSYNMVIDCLCKGKSMDRA--SEMFRD---LHNRG 504

Query: 462  LIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALV 641
            +   +V +           +IG + R G      E+   +      P    +N++ID L 
Sbjct: 505  ISPNIVTYN---------TLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLC 555

Query: 642  KSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVF 821
            +++  + A+  F +M   +  P+  TYNILI   C IG V  +  LL+QM+  G  P+ F
Sbjct: 556  QAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTF 615

Query: 822  TYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHGVFRCLPLREAYDLFLS 998
            ++  LI G+    R  +A +L ++M    + P   TY +L+  + +     +A ++FLS
Sbjct: 616  SFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLS 674


>ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g16890, mitochondrial-like
            [Cucumis sativus]
          Length = 688

 Score =  446 bits (1148), Expect = e-123
 Identities = 224/409 (54%), Positives = 291/409 (71%), Gaps = 5/409 (1%)
 Frame = +3

Query: 69   SPYNR-KKPDASKLTSSKAPVTGKSPFNLSNHRILPN-VHKLPVNVIDHSYLSEILARND 242
            SP+N  + P     +    P+   S   LS    L +  H L +  ID SY+S+IL   D
Sbjct: 45   SPFNNLEAPSRGNPSPLTTPLKAPSSIQLSTPPSLADDKHSLSLKPIDRSYISKILLSKD 104

Query: 243  WFYLLNHEFKAKRASLNQQYVVRVLQNEENPLGCVRFYVWVSNVEDRLAKDQLVQRVLGN 422
            WF LLNHEFKAKR  L+ Q+VV +LQN++NPL  +RFY+WVSNV+  L K QL+Q VL  
Sbjct: 105  WFLLLNHEFKAKRVVLSPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQLIQGVLVR 164

Query: 423  RLYRNGP---VVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYCTEVFGQISYLG 593
             L+R GP   V+LS DL++++     ++TEE++C++ GSWGRLGLA YC EVFGQI  LG
Sbjct: 165  NLHREGPDRPVLLSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVFGQIGLLG 224

Query: 594  LSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEAL 773
            L+PTTRLYNAV+DAL+KSNSLDLAY KFQQM + NCVPDRFTYNILIHGVC++G+VDEAL
Sbjct: 225  LNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEAL 284

Query: 774  RLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHGV 953
            RL+KQMEG GY PNVFTYTILIDGF NAKR  E F++L+TM+E+NV P+EAT RSLVHGV
Sbjct: 285  RLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRSLVHGV 344

Query: 954  FRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMMGKKGYIPDS 1133
            FRC+   +A++L L FV R+  +++  CD IL CL+ NS++ EA           + P S
Sbjct: 345  FRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAV---------MFXPSS 395

Query: 1134 ATFSILMVCFTKDLNLHETCNIVNGFTEHGGMLGFNTYIALIKSLFKAG 1280
            +TF+I + C  K L+L  TC + +   + G   GF+TY+ LI++L+KAG
Sbjct: 396  STFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAG 444



 Score =  100 bits (249), Expect = 8e-19
 Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 2/250 (0%)
 Frame = +3

Query: 537  RLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRF 716
            +L L   CT VF      G+ P    Y  +I+AL K+  +++      ++  D  + + +
Sbjct: 408  KLDLKVTCT-VFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIY 466

Query: 717  TYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETM 896
            +YN++I  +CK   +D A  + + +   G SPN+ TY  LI GFC    +D+A +LLE +
Sbjct: 467  SYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEML 526

Query: 897  REKNVAPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILIC--LAKNS 1070
             E    P   T+ SL+ G+ +      A+  F   V  + +        ILIC   A   
Sbjct: 527  LESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWD-VPPNVITYNILICSFCAIGD 585

Query: 1071 LSREAADILRMMGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEHGGMLGFNTYI 1250
            +SR +  +LR M   G  PD+ +F+ L+  +T      +   + +     G      TY 
Sbjct: 586  VSR-STHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYG 644

Query: 1251 ALIKSLFKAG 1280
            ALIKSL K+G
Sbjct: 645  ALIKSLCKSG 654



 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 53/196 (27%), Positives = 87/196 (44%)
 Frame = +3

Query: 561  TEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHG 740
            +E+F  +   G+SP    YN +I    ++ ++D A    + +      PD FT+N LI G
Sbjct: 485  SEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDG 544

Query: 741  VCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPS 920
            +C+    + A     +M      PNV TY ILI  FC    V  +  LL  M+   + P 
Sbjct: 545  LCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPD 604

Query: 921  EATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILR 1100
              ++ +L+ G       ++A  LF S +        +    ++  L K+    +A +I  
Sbjct: 605  TFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFL 664

Query: 1101 MMGKKGYIPDSATFSI 1148
             M + G  PDS T S+
Sbjct: 665  SMKENGCTPDSYTCSL 680



 Score = 76.6 bits (187), Expect = 1e-11
 Identities = 46/160 (28%), Positives = 80/160 (50%)
 Frame = +3

Query: 519 MIGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADN 698
           +IG + R G      E+   +      P    +N++ID L +++  + A+  F +M   +
Sbjct: 506 LIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWD 565

Query: 699 CVPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAF 878
             P+  TYNILI   C IG V  +  LL+QM+  G  P+ F++  LI G+    R  +A 
Sbjct: 566 VPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAE 625

Query: 879 QLLETMREKNVAPSEATYRSLVHGVFRCLPLREAYDLFLS 998
           +L ++M    + P   TY +L+  + +     +A ++FLS
Sbjct: 626 KLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLS 665


>ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297331015|gb|EFH61434.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 653

 Score =  430 bits (1105), Expect = e-118
 Identities = 205/363 (56%), Positives = 273/363 (75%)
 Frame = +3

Query: 189  PVNVIDHSYLSEILARNDWFYLLNHEFKAKRASLNQQYVVRVLQNEENPLGCVRFYVWVS 368
            P N ++  Y+S+++ R DWF +LN EF   R  LN ++V+ VLQN++NPL  +RFY+WVS
Sbjct: 35   PTNPLNQRYISQVIERKDWFLILNQEFTTHRIGLNIRFVISVLQNQDNPLHSLRFYLWVS 94

Query: 369  NVEDRLAKDQLVQRVLGNRLYRNGPVVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGL 548
            N +   AKDQ ++ VLGN L+R GP++LS +L+KE+     RIT+E++CV+IGSWGRLGL
Sbjct: 95   NTDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKEIRESGYRITDELMCVLIGSWGRLGL 154

Query: 549  AKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNI 728
            AKYC +VF QIS+LG+ P+TRLYNAVIDALVKSNSL+LAY KFQQM +D+C PDRFTYNI
Sbjct: 155  AKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYNI 214

Query: 729  LIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKN 908
            LIHGVCK G+VDEA+RL+KQME  G  PNVFTYTILIDGF  A R++EA + LE M+ + 
Sbjct: 215  LIHGVCKKGVVDEAIRLVKQMEREGNRPNVFTYTILIDGFLIAGRIEEALKQLEMMQVRK 274

Query: 909  VAPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAA 1088
            + P+EAT R+LVHG+FRCLP  EA+++ L F+ +  I+ + A DT+L CL+ NS+++E A
Sbjct: 275  LNPNEATIRTLVHGIFRCLPPCEAFEVLLGFMEKNSILQRVAYDTVLYCLSNNSMAKETA 334

Query: 1089 DILRMMGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEHGGMLGFNTYIALIKSL 1268
              LR  G++GYIPDS+TF+  M C  K  +L ETC I + F   G   GFN Y+ L+++L
Sbjct: 335  LFLRKTGERGYIPDSSTFNAAMNCLLKGHHLVETCGIFDCFVSRGAKPGFNGYLVLVQAL 394

Query: 1269 FKA 1277
              A
Sbjct: 395  LNA 397



 Score = 82.8 bits (203), Expect = 2e-13
 Identities = 45/149 (30%), Positives = 75/149 (50%)
 Frame = +3

Query: 591  GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 770
            G +P    ++ +I+ L ++  +  A+  F++M      P+  TYNILI   C  G    +
Sbjct: 484  GCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRSSCSTGDTGRS 543

Query: 771  LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 950
            ++L   M+ SG SPN++ Y  +I  FC  K+V +A +LL+TM    + P   TY +L+  
Sbjct: 544  VKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKPDNFTYSTLIKA 603

Query: 951  VFRCLPLREAYDLFLSFVGREPIMSKHAC 1037
            +       EA ++F S       M +H C
Sbjct: 604  LSESGRESEAREMFSS-------MERHGC 625



 Score = 80.9 bits (198), Expect = 7e-13
 Identities = 52/211 (24%), Positives = 97/211 (45%)
 Frame = +3

Query: 591  GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 770
            GL  +   YNAVID L K+   + A     +M      P+  T+N  + G    G V + 
Sbjct: 414  GLLSSVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAGGDVKKV 473

Query: 771  LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 950
              +++++   G +P+V T++++I+  C AK + +AF   + M E  + P+E TY  L+  
Sbjct: 474  HGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRS 533

Query: 951  VFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMMGKKGYIPD 1130
                     +  LF +        + +A + I+    K    ++A ++L+ M + G  PD
Sbjct: 534  SCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKPD 593

Query: 1131 SATFSILMVCFTKDLNLHETCNIVNGFTEHG 1223
            + T+S L+   ++     E   + +    HG
Sbjct: 594  NFTYSTLIKALSESGRESEAREMFSSMERHG 624



 Score = 67.8 bits (164), Expect = 6e-09
 Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 9/237 (3%)
 Frame = +3

Query: 591  GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 770
            G  P +  +NA ++ L+K + L      F    +    P    Y +L+  +         
Sbjct: 344  GYIPDSSTFNAAMNCLLKGHHLVETCGIFDCFVSRGAKPGFNGYLVLVQALLNAQRFSAG 403

Query: 771  LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 950
             R LKQM G G   +V+TY  +ID  C A+R + A   L  M+++ ++P+  T+ + + G
Sbjct: 404  DRYLKQMGGDGLLSSVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSG 463

Query: 951  VFRCLPLREAYDLFLSFVGREPIMSKHACD-------TILICLAKNSLSREAADILRMMG 1109
                  +++ +       G    + +H C+        I+ CL +    ++A D  + M 
Sbjct: 464  YSAGGDVKKVH-------GVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEML 516

Query: 1110 KKGYIPDSATFSILM--VCFTKDLNLHETCNIVNGFTEHGGMLGFNTYIALIKSLFK 1274
            + G  P+  T++IL+   C T D     +  +     E G       Y A+I+S  K
Sbjct: 517  EWGIKPNEITYNILIRSSCSTGDTG--RSVKLFANMKESGLSPNLYAYNAIIQSFCK 571



 Score = 57.4 bits (137), Expect = 8e-06
 Identities = 41/152 (26%), Positives = 62/152 (40%)
 Frame = +3

Query: 564  EVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGV 743
            + F ++   G+ P    YN +I +   +     +   F  M      P+ + YN +I   
Sbjct: 510  DCFKEMLEWGIKPNEITYNILIRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSF 569

Query: 744  CKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSE 923
            CK+  V +A  LLK M   G  P+ FTY+ LI     + R  EA ++  +M      P  
Sbjct: 570  CKMKKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSMERHGCVPDS 629

Query: 924  ATYRSLVHGVFRCLPLREAYDLFLSFVGREPI 1019
             T R           L E  DL  S + RE +
Sbjct: 630  YTKR-----------LVEELDLRQSGLSRETV 650


>ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName:
            Full=Putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial; AltName: Full=Protein
            PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
            gi|7670019|dbj|BAA94973.1| salt-inducible protein-like
            [Arabidopsis thaliana] gi|332642359|gb|AEE75880.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 659

 Score =  428 bits (1101), Expect = e-117
 Identities = 202/363 (55%), Positives = 270/363 (74%)
 Frame = +3

Query: 189  PVNVIDHSYLSEILARNDWFYLLNHEFKAKRASLNQQYVVRVLQNEENPLGCVRFYVWVS 368
            P N ++  Y+S+++ R DWF +LN EF   R  LN ++V+ VLQN++NPL  +RFY+WVS
Sbjct: 41   PTNPLNQRYISQVIERKDWFLILNQEFTTHRIGLNTRFVISVLQNQDNPLHSLRFYLWVS 100

Query: 369  NVEDRLAKDQLVQRVLGNRLYRNGPVVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGL 548
            N +   AKDQ ++ VLGN L+R GP++LS +L+KE+     RI++E++CV+IGSWGRLGL
Sbjct: 101  NFDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGL 160

Query: 549  AKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNI 728
            AKYC +VF QIS+LG+ P+TRLYNAVIDALVKSNSLDLAY KFQQM +D C PDRFTYNI
Sbjct: 161  AKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNI 220

Query: 729  LIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKN 908
            LIHGVCK G+VDEA+RL+KQME  G  PNVFTYTILIDGF  A RVDEA + LE MR + 
Sbjct: 221  LIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRK 280

Query: 909  VAPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAA 1088
            + P+EAT R+ VHG+FRCLP  +A+++ + F+ ++  + +   D +L CL+ NS+++E  
Sbjct: 281  LNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETG 340

Query: 1089 DILRMMGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEHGGMLGFNTYIALIKSL 1268
              LR +G++GYIPDS+TF+  M C  K  +L ETC I +GF   G   GFN Y+ L+++L
Sbjct: 341  QFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQAL 400

Query: 1269 FKA 1277
              A
Sbjct: 401  LNA 403



 Score = 81.6 bits (200), Expect = 4e-13
 Identities = 53/216 (24%), Positives = 97/216 (44%)
 Frame = +3

Query: 576  QISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIG 755
            Q+   GL  +   YNAVID L K+  ++ A     +M      P+  T+N  + G    G
Sbjct: 415  QMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRG 474

Query: 756  IVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYR 935
             V +   +L+++   G+ P+V T++++I+  C AK + +AF   + M E  + P+E TY 
Sbjct: 475  DVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYN 534

Query: 936  SLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREAADILRMMGKK 1115
             L+           +  LF            +A +  +    K    ++A ++L+ M + 
Sbjct: 535  ILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRI 594

Query: 1116 GYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEHG 1223
            G  PD+ T+S L+   ++     E   + +    HG
Sbjct: 595  GLKPDNFTYSTLIKALSESGRESEAREMFSSIERHG 630



 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 8/172 (4%)
 Frame = +3

Query: 591  GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 770
            G  P    ++ +I+ L ++  +  A+  F++M      P+  TYNILI   C  G  D +
Sbjct: 490  GFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRS 549

Query: 771  LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSEATYRSLVHG 950
            ++L  +M+ +G SP+++ Y   I  FC  ++V +A +LL+TM    + P   TY +L+  
Sbjct: 550  VKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKA 609

Query: 951  VFRCLPLREAYDLFLSFVGREPIMSKHAC--DTIL------ICLAKNSLSRE 1082
            +       EA ++F S       + +H C  D+        + L K+ LSRE
Sbjct: 610  LSESGRESEAREMFSS-------IERHGCVPDSYTKRLVEELDLRKSGLSRE 654



 Score = 66.6 bits (161), Expect = 1e-08
 Identities = 58/247 (23%), Positives = 109/247 (44%), Gaps = 4/247 (1%)
 Frame = +3

Query: 546  LAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYN 725
            +AK   +   +I   G  P +  +NA +  L+K + L      F    +    P    Y 
Sbjct: 335  MAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYL 394

Query: 726  ILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREK 905
            +L+  +       E  R LKQM   G   +V++Y  +ID  C A+R++ A   L  M+++
Sbjct: 395  VLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDR 454

Query: 906  NVAPSEATYRSLVHGVFRCLPLREAYDLF--LSFVGREPIMSKHACDTILICLAKNSLSR 1079
             ++P+  T+ + + G      +++ + +   L   G +P +   +   I+ CL +    +
Sbjct: 455  GISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFS--LIINCLCRAKEIK 512

Query: 1080 EAADILRMMGKKGYIPDSATFSILM--VCFTKDLNLHETCNIVNGFTEHGGMLGFNTYIA 1253
            +A D  + M + G  P+  T++IL+   C T D +   +  +     E+G       Y A
Sbjct: 513  DAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTD--RSVKLFAKMKENGLSPDLYAYNA 570

Query: 1254 LIKSLFK 1274
             I+S  K
Sbjct: 571  TIQSFCK 577



 Score = 60.5 bits (145), Expect = 9e-07
 Identities = 42/152 (27%), Positives = 64/152 (42%)
 Frame = +3

Query: 564  EVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGV 743
            + F ++   G+ P    YN +I +   +   D +   F +M  +   PD + YN  I   
Sbjct: 516  DCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSF 575

Query: 744  CKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVAPSE 923
            CK+  V +A  LLK M   G  P+ FTY+ LI     + R  EA ++  ++      P  
Sbjct: 576  CKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDS 635

Query: 924  ATYRSLVHGVFRCLPLREAYDLFLSFVGREPI 1019
             T R           L E  DL  S + RE +
Sbjct: 636  YTKR-----------LVEELDLRKSGLSRETV 656