BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018659
         (901 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    88   1e-20
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    71   5e-17
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]              73   1e-15
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]              72   2e-15
gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japo...    67   4e-15

>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 88.2 bits (217), Expect(2) = 1e-20
 Identities = 58/177 (32%), Positives = 84/177 (47%)
 Frame = -1

Query: 550  QDRLRWLHTRSGAVTVKSAYSLLVRKQEIAQSSSTNLRTVKAIWKLPIPANVQVLLWKAY 371
            QD L WL  +SG  T K+ Y+L   K     +S  +    K IWK+     V+  LWKA 
Sbjct: 934  QDSLVWLPVKSGEYTTKTGYALA--KLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKAM 991

Query: 370  MGGLPTGNVLRCRGIKGDVSCPFCEETQEDPEHLFFLCAWVRTIWFGSNIGARVEDNEGF 191
             G LP G  L  R I+ +V+C  C +T E   HL  LC + + +W  + +     +    
Sbjct: 992  KGALPVGEALSRRNIEAEVTCKRCGQT-ESSLHLMLLCPYAKKVWELAPVLFNPSEATHS 1050

Query: 190  SVKEWLDLFVEWTAAQDEGIAEKGILAMLLIHELWELRNKVKFENSSKNREGLLRRA 20
            SV   L       A    G+    +   LL H LW+ RN++ F+N S + EGL+ +A
Sbjct: 1051 SVALLLVDAKRMVALPPTGLGSAPLYPWLLWH-LWKARNRLIFDNHSCSEEGLVLKA 1106



 Score = 38.5 bits (88), Expect(2) = 1e-20
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = -2

Query: 861  PPHASWFWKGIHRVAVSMLEGCVWSIGKGDKVSLMNHPWLVLN--QRPISLQELMPDEAE 688
            P  AS  W+GI      + +G  WSIG+GD +++    WL  +  Q PI      P    
Sbjct: 836  PSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIG-----PPTET 890

Query: 687  LHGLKVKDIMLGDGSGWDRGRIEALFPPF 601
               L V D++  D   W+   I    P +
Sbjct: 891  NKDLSVHDLICHDVKSWNVEAIRKHLPQY 919


>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 70.9 bits (172), Expect(2) = 5e-17
 Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 8/184 (4%)
 Frame = -1

Query: 547 DRLRWLHTRSGAVTVKSAYSLLVR-------KQEIAQSSSTNLRTVKAIWKLPIPANVQV 389
           D   W +T SG  TVKS Y +L +        QE+++ S   +   + IWK      +Q 
Sbjct: 211 DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPI--YQKIWKSQTSPKIQH 268

Query: 388 LLWKAYMGGLPTGNVLRCRGIKGDVSCPFCEETQEDPEHLFFLCAWVRTIWFGSNIGARV 209
            LWK     LP    L  R +  + +C  C   +E   HL F C + R  W  S+I   +
Sbjct: 269 FLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPL 328

Query: 208 EDNEGFSVKEWLDLFVEWTAAQDEGIAEKGI-LAMLLIHELWELRNKVKFENSSKNREGL 32
                 S+  +++L+  +         EK   L   L+  LW+ RN++ F     N + +
Sbjct: 329 GGEWADSI--YVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEV 386

Query: 31  LRRA 20
           LRRA
Sbjct: 387 LRRA 390



 Score = 43.5 bits (101), Expect(2) = 5e-17
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
 Frame = -2

Query: 849 SWFWKGIHRVAVSMLEGCVWSIGKGDKVSLMNHPWLVLNQRPIS----LQELMPDE-AEL 685
           S+ WK IH     + +G    +G G+ + +  H W  L+ +P S    +Q + P E A +
Sbjct: 108 SFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKW--LDSKPASAALRMQRVPPQEYASV 165

Query: 684 HG-LKVKDIMLGDGSGWDRGRIEALFPPFVSTLIQQV 577
              LKV D++   G  W +  IE LFP     LI ++
Sbjct: 166 SSILKVSDLIDESGREWRKDVIEMLFPEVERKLIGEL 202


>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score = 72.8 bits (177), Expect(2) = 1e-15
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 1/182 (0%)
 Frame = -1

Query: 562  NHGAQDRLRWLHTRSGAVTVKSAYSLLVRKQEIAQSSSTNLRTVKAIWKLPIPANVQVLL 383
            N   +D L W H+ +G VTV SAYSL+            + R+   IW+      +++ +
Sbjct: 1001 NSEQEDFLSWPHSTTGMVTVSSAYSLIA-------GHDGDDRSHDWIWRATCTEKIKLFM 1053

Query: 382  WKAYMGGLPTGNVLRCRGIKGDVSCPFCEETQEDPEHLFFLCAWVRTIWFGSNIGARVED 203
            WK    GL      + RG+    SCP C E  E  +HLF  C      W  +      + 
Sbjct: 1054 WKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQT 1113

Query: 202  NEGFSVKEWLDLFVEWTAAQDEGIAEK-GILAMLLIHELWELRNKVKFENSSKNREGLLR 26
            +    +  W+      ++ Q +G +    ++   ++  LW+ RN++ F+N+      +L 
Sbjct: 1114 SNHLHMHSWMK--AACSSQQKDGYSTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILN 1171

Query: 25   RA 20
            R+
Sbjct: 1172 RS 1173



 Score = 36.6 bits (83), Expect(2) = 1e-15
 Identities = 18/83 (21%), Positives = 38/83 (45%)
 Frame = -2

Query: 855  HASWFWKGIHRVAVSMLEGCVWSIGKGDKVSLMNHPWLVLNQRPISLQELMPDEAELHGL 676
            + SW W+ I +    +     W++G G K++  N  W  +   P++      ++  +  +
Sbjct: 907  NCSWGWRSIMKGKDVLAGAIKWNVGNGRKINFWNDWW--VGDGPLASNTDCINQPHMTDI 964

Query: 675  KVKDIMLGDGSGWDRGRIEALFP 607
            KV+D++      WD G +  + P
Sbjct: 965  KVEDLITSQ-RRWDTGALHNILP 986


>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score = 72.4 bits (176), Expect(2) = 2e-15
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 1/182 (0%)
 Frame = -1

Query: 562  NHGAQDRLRWLHTRSGAVTVKSAYSLLVRKQEIAQSSSTNLRTVKAIWKLPIPANVQVLL 383
            N   +D L W H+ +G VTV SAYSL+            + R+   IW+      +++ +
Sbjct: 1001 NSEQEDFLSWPHSTTGMVTVSSAYSLIA-------GHDGDDRSHDWIWRATCTEKIKLFM 1053

Query: 382  WKAYMGGLPTGNVLRCRGIKGDVSCPFCEETQEDPEHLFFLCAWVRTIWFGSNIGARVED 203
            WK    GL      + RG+    SCP C E  E  +HLF  C      W  +      + 
Sbjct: 1054 WKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQT 1113

Query: 202  NEGFSVKEWLDLFVEWTAAQDEGIAEK-GILAMLLIHELWELRNKVKFENSSKNREGLLR 26
            +    +  W+      ++ Q +G      ++   ++  LW+ RN++ F+N+      +L 
Sbjct: 1114 SNHLHMHSWMK--AACSSQQKDGYGTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILN 1171

Query: 25   RA 20
            R+
Sbjct: 1172 RS 1173



 Score = 36.6 bits (83), Expect(2) = 2e-15
 Identities = 18/83 (21%), Positives = 38/83 (45%)
 Frame = -2

Query: 855  HASWFWKGIHRVAVSMLEGCVWSIGKGDKVSLMNHPWLVLNQRPISLQELMPDEAELHGL 676
            + SW W+ I +    +     W++G G K++  N  W  +   P++      ++  +  +
Sbjct: 907  NCSWGWRSIMKGKDVLAGAIKWNVGNGRKINFWNDWW--VGDGPLASNTDCINQPHMTDI 964

Query: 675  KVKDIMLGDGSGWDRGRIEALFP 607
            KV+D++      WD G +  + P
Sbjct: 965  KVEDLITSQ-RRWDTGALHNILP 986


>gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japonica Group]
          Length = 615

 Score = 66.6 bits (161), Expect(2) = 4e-15
 Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
 Frame = -1

Query: 577 LVIRPNHGAQDRLRWLHTRSGAVTVKSAYSLLVR-------KQEIAQSSS-TNLRTV--K 428
           L I    G +D L W     G  +VKSAY +L         KQ+ A SS  TN+  +  +
Sbjct: 445 LTIPIRAGVEDGLAWHFDNRGIFSVKSAYHVLEDERRRHKPKQDGASSSGQTNMEKLCWQ 504

Query: 427 AIWKLPIPANVQVLLWKAYMGGLPTGNVLRCRGIKGDVSCPFCEETQEDPEHLFFLCAWV 248
            IWKLP    V+  +W      LP    ++ RG++ D  CP C    ED  H F  C  +
Sbjct: 505 QIWKLPYLPKVKHFIWHLAHNSLPFRMSIQKRGMQIDTRCPVCHRQNEDGGHYFLKCKLM 564

Query: 247 RTIWFGSNI-GARVEDNEGFSVKEWLDLFVEWTAAQDEGI 131
           R  W   ++   R+E  +  S  E++D  ++ +  Q++ I
Sbjct: 565 RKCWQSLDLEECRLELVQMQSASEFVDKIMQKSDGQNDYI 604



 Score = 41.2 bits (95), Expect(2) = 4e-15
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = -2

Query: 858 PHASWFWKGIHRVAVSMLEGCVWSIGKGDKVSLMNHPWLV--LNQRPISLQELMPDEAEL 685
           P  S+ W+ I R   ++ +G +W +G G  + + + PWL   + +RPI+           
Sbjct: 358 PGISYSWRSIVRGIQALKKGLIWRVGDGTNIDIWHDPWLPSGITRRPIT------PRGRT 411

Query: 684 HGLKVKDIMLGDGSGWDRGRIEALF 610
              KV D++      WD+  IE LF
Sbjct: 412 VVNKVTDLIDPTIGKWDKELIEGLF 436