BLASTX nr result
ID: Coptis21_contig00018540
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00018540
(385 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pen... 145 3e-33
ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat... 145 3e-33
ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containi... 144 6e-33
ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cuc... 144 1e-32
ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat... 143 2e-32
>ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 145 bits (367), Expect = 3e-33
Identities = 66/127 (51%), Positives = 90/127 (70%)
Frame = +2
Query: 2 ISGYAKIGESGEMRRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNE 181
+SG+ +GE R FD+MP K+ VSW MI Y+ + +F EALELFR MQ ++VKP+E
Sbjct: 313 VSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDE 372
Query: 182 VTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFNN 361
T+V+VL CAHLGAL+LG+W+ YIDRN++K D++V ALIDMY KCG V+ A+ +F
Sbjct: 373 FTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFRE 432
Query: 362 ARVKDTF 382
+D F
Sbjct: 433 MSQRDKF 439
Score = 86.7 bits (213), Expect = 2e-15
Identities = 43/122 (35%), Positives = 70/122 (57%)
Frame = +2
Query: 11 YAKIGESGEMRRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNEVTV 190
Y G+ R +FD P+ +V++WN++I+ Y +F E+ LF VM+ V P VT+
Sbjct: 184 YLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTL 243
Query: 191 VAVLPVCAHLGALDLGKWVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFNNARV 370
V VL C+ L L GK VH+Y+ +V+ ++ + A+IDMY CG ++ A +F +
Sbjct: 244 VLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNN 303
Query: 371 KD 376
+D
Sbjct: 304 RD 305
Score = 63.2 bits (152), Expect = 2e-08
Identities = 35/112 (31%), Positives = 60/112 (53%)
Frame = +2
Query: 23 GESGEMRRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNEVTVVAVL 202
G+ RRLFDE+P N+ WN MI Y + L+ M VKP+ T +
Sbjct: 87 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146
Query: 203 PVCAHLGALDLGKWVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFN 358
AL+ G+ +H ++ ++ ++ +++V+TAL+ MY CG ++ A+ VF+
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFD 198
Score = 62.0 bits (149), Expect = 5e-08
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Frame = +2
Query: 2 ISGYAKIGESGEMRRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNE 181
I Y K G+ + +F EM +++ +W MI N +AL++F M + + P+E
Sbjct: 414 IDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDE 473
Query: 182 VTVVAVLPVCAHLGALDLG-KWVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFN 358
+T + VL C H G +D G K+ ++ ++ +I L+D+ + G +++A V
Sbjct: 474 ITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIE 533
Query: 359 NARVK 373
N +K
Sbjct: 534 NMPIK 538
>ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 145 bits (367), Expect = 3e-33
Identities = 66/127 (51%), Positives = 90/127 (70%)
Frame = +2
Query: 2 ISGYAKIGESGEMRRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNE 181
+SG+ +GE R FD+MP K+ VSW MI Y+ + +F EALELFR MQ ++VKP+E
Sbjct: 292 VSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDE 351
Query: 182 VTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFNN 361
T+V+VL CAHLGAL+LG+W+ YIDRN++K D++V ALIDMY KCG V+ A+ +F
Sbjct: 352 FTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFRE 411
Query: 362 ARVKDTF 382
+D F
Sbjct: 412 MSQRDKF 418
Score = 86.7 bits (213), Expect = 2e-15
Identities = 43/122 (35%), Positives = 70/122 (57%)
Frame = +2
Query: 11 YAKIGESGEMRRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNEVTV 190
Y G+ R +FD P+ +V++WN++I+ Y +F E+ LF VM+ V P VT+
Sbjct: 163 YLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTL 222
Query: 191 VAVLPVCAHLGALDLGKWVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFNNARV 370
V VL C+ L L GK VH+Y+ +V+ ++ + A+IDMY CG ++ A +F +
Sbjct: 223 VLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNN 282
Query: 371 KD 376
+D
Sbjct: 283 RD 284
Score = 63.2 bits (152), Expect = 2e-08
Identities = 35/112 (31%), Positives = 60/112 (53%)
Frame = +2
Query: 23 GESGEMRRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNEVTVVAVL 202
G+ RRLFDE+P N+ WN MI Y + L+ M VKP+ T +
Sbjct: 66 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125
Query: 203 PVCAHLGALDLGKWVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFN 358
AL+ G+ +H ++ ++ ++ +++V+TAL+ MY CG ++ A+ VF+
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFD 177
Score = 62.0 bits (149), Expect = 5e-08
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Frame = +2
Query: 2 ISGYAKIGESGEMRRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNE 181
I Y K G+ + +F EM +++ +W MI N +AL++F M + + P+E
Sbjct: 393 IDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDE 452
Query: 182 VTVVAVLPVCAHLGALDLG-KWVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFN 358
+T + VL C H G +D G K+ ++ ++ +I L+D+ + G +++A V
Sbjct: 453 ITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIE 512
Query: 359 NARVK 373
N +K
Sbjct: 513 NMPIK 517
>ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 144 bits (364), Expect = 6e-33
Identities = 72/125 (57%), Positives = 87/125 (69%)
Frame = +2
Query: 2 ISGYAKIGESGEMRRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNE 181
ISGY +G E RR+F E P KNVVSWN MIT Y H +F E L LF MQ + VKP+
Sbjct: 212 ISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDN 271
Query: 182 VTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFNN 361
T+V+VL CAH+GAL G+WVHAYID+N + ID +V TAL+DMY KCGS+E A VFN+
Sbjct: 272 CTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNS 331
Query: 362 ARVKD 376
KD
Sbjct: 332 CLRKD 336
Score = 63.9 bits (154), Expect = 1e-08
Identities = 28/110 (25%), Positives = 54/110 (49%)
Frame = +2
Query: 47 LFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNEVTVVAVLPVCAHLGA 226
+F +P N WN +I Y ++ AL +F M + V P++ T L C
Sbjct: 64 IFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSG 123
Query: 227 LDLGKWVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFNNARVKD 376
++ G+ +H ++ + + D+++ LI +Y CG +EDA+ + + +D
Sbjct: 124 VEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERD 173
Score = 58.5 bits (140), Expect = 5e-07
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Frame = +2
Query: 11 YAKIGESGEMRRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNEVTV 190
Y+K G + +F+ RK++ +WN +I+ + AL++F M + KPNEVT
Sbjct: 316 YSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTF 375
Query: 191 VAVLPVCAHLGALDLGK-WVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFNNAR 367
V VL C+ G LD G+ + + + ++ I ++D+ G+ G +E+A+ +
Sbjct: 376 VCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMP 435
Query: 368 VKD 376
K+
Sbjct: 436 QKE 438
>ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 144 bits (362), Expect = 1e-32
Identities = 66/126 (52%), Positives = 91/126 (72%), Gaps = 1/126 (0%)
Frame = +2
Query: 2 ISGYAKIGESGEMRRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSD-VKPN 178
ISGYA++G E R+LF+ MP +NVVSWN MI Y N ++ +A+ELFR MQ + PN
Sbjct: 231 ISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPN 290
Query: 179 EVTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFN 358
+VT+V+VL CAHLGALDLGKW+H +I RN++++ +++ AL DMY KCG V +AK VF+
Sbjct: 291 DVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFH 350
Query: 359 NARVKD 376
+D
Sbjct: 351 EMHERD 356
>ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 143 bits (360), Expect = 2e-32
Identities = 66/127 (51%), Positives = 91/127 (71%)
Frame = +2
Query: 2 ISGYAKIGESGEMRRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNE 181
++G+A IG+ R+ FD++P ++ VSW MI Y+ +F+EAL LFR MQ+S+VKP+E
Sbjct: 281 VTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDE 340
Query: 182 VTVVAVLPVCAHLGALDLGKWVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFNN 361
T+V++L CAHLGAL+LG+WV YID+N +K D +V ALIDMY KCG+V AK+VF
Sbjct: 341 FTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKE 400
Query: 362 ARVKDTF 382
KD F
Sbjct: 401 MHHKDKF 407
Score = 81.6 bits (200), Expect = 6e-14
Identities = 40/112 (35%), Positives = 69/112 (61%)
Frame = +2
Query: 41 RRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNEVTVVAVLPVCAHL 220
R++FD VV+WN+M++ Y +QF ++ LF M+ V PN VT+V +L C+ L
Sbjct: 162 RKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKL 221
Query: 221 GALDLGKWVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFNNARVKD 376
L+ GK ++ YI+ V+ ++ + LIDM+ CG +++A+ VF+N + +D
Sbjct: 222 KDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRD 273
Score = 65.5 bits (158), Expect = 4e-09
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Frame = +2
Query: 2 ISGYAKIGESGEMRRLFDEMPRKNVVSWNVMITCYVHNRQFLEALELFRVMQLSDVKPNE 181
I Y K G G+ +++F EM K+ +W MI N EAL +F M + + P+E
Sbjct: 382 IDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDE 441
Query: 182 VTVVAVLPVCAHLGALDLGK-WVHAYIDRNRVKIDIYVNTALIDMYGKCGSVEDAKRVFN 358
+T + VL C H G ++ G+ + + ++ +K ++ ++D+ G+ G +E+A V
Sbjct: 442 ITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIV 501
Query: 359 NARVK 373
N VK
Sbjct: 502 NMPVK 506