BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018535
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidop...    68   5e-15
dbj|BAB08885.1| retroelement pol polyprotein-like [Arabidopsis t...    67   2e-13
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...    64   8e-13
emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]    67   1e-12
emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]    62   6e-12

>gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidopsis thaliana]
          Length = 1152

 Score = 67.8 bits (164), Expect(2) = 5e-15
 Identities = 27/70 (38%), Positives = 45/70 (64%)
 Frame = +2

Query: 95  KTVPFPDQVKVLWDDLRDRYSLRNGHRIHELKNMIADCKQRGRSIAEYYGELRTLWEELA 274
           K++   D  +V+W+ LR RYS+ N  R+H+LK  I  C+Q G++ A Y+G+L+ +W++L 
Sbjct: 105 KSISVVDNARVMWESLRTRYSVGNASRVHQLKYDIVACRQDGQTAANYFGKLKVMWDDLD 164

Query: 275 SAIKLPSCMC 304
               L +C C
Sbjct: 165 DYEPLLTCCC 174



 Score = 37.7 bits (86), Expect(2) = 5e-15
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +3

Query: 3   PDANSPDYGQWGIVNSMLVAWIFNTLDVSIR 95
           P ++SPDY +W   NSMLV W++ +LD  ++
Sbjct: 74  PSSDSPDYPRWLQTNSMLVGWLYASLDPQVQ 104


>dbj|BAB08885.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 370

 Score = 67.0 bits (162), Expect(2) = 2e-13
 Identities = 26/58 (44%), Positives = 40/58 (68%)
 Frame = +2

Query: 98  TVPFPDQVKVLWDDLRDRYSLRNGHRIHELKNMIADCKQRGRSIAEYYGELRTLWEEL 271
           TV F     +LWD+LR R+S+ N  R+H++K  +A C+Q G+++ +YYG L  LW+EL
Sbjct: 111 TVTFISDAHLLWDELRQRFSVTNNVRVHQIKAQLASCRQEGQTVIDYYGRLCNLWDEL 168



 Score = 33.5 bits (75), Expect(2) = 2e-13
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 3   PDANSPDYGQWGIVNSMLVAWIFNTLDVSIR 95
           P ++SPD+  W  VNSM+V WI  +++  ++
Sbjct: 79  PASDSPDFENWKTVNSMIVGWIRVSIEPKVK 109


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score = 63.9 bits (154), Expect(2) = 8e-13
 Identities = 27/69 (39%), Positives = 41/69 (59%)
 Frame = +2

Query: 98  TVPFPDQVKVLWDDLRDRYSLRNGHRIHELKNMIADCKQRGRSIAEYYGELRTLWEELAS 277
           TV F     +LW DL+ R+S+ N  RIH+++  ++ C+Q G+++ EYYG L  LWEE   
Sbjct: 113 TVTFISDAHLLWKDLKQRFSVGNKVRIHQIRAQLSSCRQDGQAVIEYYGRLSNLWEEYNI 172

Query: 278 AIKLPSCMC 304
              +  C C
Sbjct: 173 YKPVTVCTC 181



 Score = 34.3 bits (77), Expect(2) = 8e-13
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 3   PDANSPDYGQWGIVNSMLVAWIFNTLDVSIR 95
           P  N P+Y  W  VNSM+V WI  +++  ++
Sbjct: 81  PPPNDPNYENWTAVNSMIVGWIRTSIEPKVK 111


>emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]
          Length = 1157

 Score = 67.0 bits (162), Expect(2) = 1e-12
 Identities = 24/59 (40%), Positives = 43/59 (72%)
 Frame = +2

Query: 128 LWDDLRDRYSLRNGHRIHELKNMIADCKQRGRSIAEYYGELRTLWEELASAIKLPSCMC 304
           LW++++ ++S+ NG R+ +LK+ + +CKQ G+ I  YYG+L++LW+EL +   +P C C
Sbjct: 63  LWEEIKQQFSIGNGPRVQQLKSYLVNCKQEGQGIIVYYGKLKSLWDELNNYDSIPVCTC 121



 Score = 30.8 bits (68), Expect(2) = 1e-12
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 3   PDANSPDYGQWGIVNSMLVAW 65
           PD +SP+   W  +NSMLV+W
Sbjct: 41  PDNDSPELEDWWTINSMLVSW 61


>emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]
          Length = 1450

 Score = 62.4 bits (150), Expect(2) = 6e-12
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = +2

Query: 122 KVLWDDLRDRYSLRNGHRIHELKNMIADCKQ-RGRSIAEYYGELRTLWEELASAIKLPSC 298
           K LW+ L+ RY++ NG RI +LK  IA C+Q +  S+  YYG+L  LWEEL     L SC
Sbjct: 110 KRLWEHLKQRYAMVNGPRIQQLKTSIAKCEQSKSMSVTTYYGKLNVLWEELFKHEPLISC 169

Query: 299 MC 304
            C
Sbjct: 170 TC 171



 Score = 32.7 bits (73), Expect(2) = 6e-12
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 18  PDYGQ--WGIVNSMLVAWIFNTLDVSIR 95
           P Y Q  W  VN+MLV+WI NT+D  ++
Sbjct: 73  PPYTQSDWNTVNAMLVSWITNTIDPEVK 100