BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018517
         (520 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi...   196   1e-48
ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi...   194   8e-48
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t...   171   8e-41
ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   170   1e-40
ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi...   170   1e-40

>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score =  196 bits (499), Expect = 1e-48
 Identities = 96/149 (64%), Positives = 120/149 (80%)
 Frame = +1

Query: 73  VYDIFVGNSLLVIMYTLCGSMVEGKKLFGEMPVRSAV*WTVMISVYAKKGDVETSRLYFD 252
           V+DIFVGNSL+  MY++CG ++  + +F EMP  SAV W+VMIS YAK GDV+++RL+FD
Sbjct: 137 VFDIFVGNSLMA-MYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFD 195

Query: 253 NAPVKDRGIWGSMNSGYVQNNCFKEGLEMFRLIQSEGFEPDEAVFDSVLSASAH*GAMDI 432
            AP KDRGIWG+M SGYVQN+CFKEGL +FRL+Q     PDE++F S+LSA AH GA+DI
Sbjct: 196 EAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDI 255

Query: 433 GIWIHRYLDRKQSLLSIRLSMELIDMYAR 519
           GIWIHRYL+RK   LSIRLS  L+DMYA+
Sbjct: 256 GIWIHRYLNRKTVSLSIRLSTSLLDMYAK 284



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
 Frame = +1

Query: 190 TVMISVYAKKGDVETSRLYFDNAPVKDRGIWGSMNSGYVQNNCFKEGLEMFRLIQSEGFE 369
           T ++ +YAK G++E ++  FD+ P +D   W +M SG   +      L+MF  ++  G +
Sbjct: 276 TSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIK 335

Query: 370 PDEAVFDSVLSASAH*GAMDIGIWIHRYLDRKQSLLSIRLSME----LIDMYAR 519
           PD+  F +V +A ++ G    G+   + LD+  SL  I    E    L+D+ +R
Sbjct: 336 PDDITFIAVFTACSYSGMAHEGL---QLLDKMSSLYEIEPKSEHYGCLVDLLSR 386


>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score =  194 bits (492), Expect = 8e-48
 Identities = 95/148 (64%), Positives = 118/148 (79%)
 Frame = +1

Query: 76  YDIFVGNSLLVIMYTLCGSMVEGKKLFGEMPVRSAV*WTVMISVYAKKGDVETSRLYFDN 255
           +DIFVGN+L+  MY+  G++   + +F EMP  +AV WTVMIS YAK GDVET+R+ FD 
Sbjct: 138 FDIFVGNTLIA-MYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDE 196

Query: 256 APVKDRGIWGSMNSGYVQNNCFKEGLEMFRLIQSEGFEPDEAVFDSVLSASAH*GAMDIG 435
           AP+KDRGIWGS+ SGYVQNNCFKEGL+MFRL+QS G EPDEA+  S+L A AH GAM+IG
Sbjct: 197 APMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIG 256

Query: 436 IWIHRYLDRKQSLLSIRLSMELIDMYAR 519
           +W+HRYLD+    LS+RLS  LIDMYA+
Sbjct: 257 VWVHRYLDQLGHPLSVRLSTGLIDMYAK 284


>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 525

 Score =  171 bits (432), Expect = 8e-41
 Identities = 84/150 (56%), Positives = 116/150 (77%), Gaps = 1/150 (0%)
 Frame = +1

Query: 73  VYDIFVGNSLLVIMYTLCGSMVEGKKLFGEMPVRSAV*WTVMISVYAKKGDVETSRLYFD 252
           V+DI+VGNSL+  MY + G +V  + +F E+P  + V W+VMIS YAK GDV+++RL+FD
Sbjct: 139 VFDIYVGNSLMA-MYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFD 197

Query: 253 NAPVKDRGIWGSMNSGYVQNNCFKEGLEMFRLIQSEGFEPDEAVFDSVLSASAH*GAMDI 432
            AP KD+GIWG+M SGYVQN+CFKE L +FRL+Q     PDE++F S+LSA AH GA++I
Sbjct: 198 EAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEI 257

Query: 433 GIWIHRYLDR-KQSLLSIRLSMELIDMYAR 519
           G+WIH++L++ K   LS+RLS  L+DMYA+
Sbjct: 258 GVWIHQHLNQLKLVPLSVRLSTSLLDMYAK 287


>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  170 bits (431), Expect = 1e-40
 Identities = 90/145 (62%), Positives = 106/145 (73%)
 Frame = +1

Query: 85  FVGNSLLVIMYTLCGSMVEGKKLFGEMPVRSAV*WTVMISVYAKKGDVETSRLYFDNAPV 264
           FVGNSLLV MY    +M   +++F EMP  SAV WTVMI  YA  GDV+T+R  FD A V
Sbjct: 141 FVGNSLLV-MYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATV 199

Query: 265 KDRGIWGSMNSGYVQNNCFKEGLEMFRLIQSEGFEPDEAVFDSVLSASAH*GAMDIGIWI 444
           KD GIWG+M SGYVQNNCFKEGL MFRL+Q    EPDEA+  ++LSA AH GA+D GIWI
Sbjct: 200 KDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWI 259

Query: 445 HRYLDRKQSLLSIRLSMELIDMYAR 519
           HRYL R    L++R+S  LIDMYA+
Sbjct: 260 HRYLGRLGLPLTLRVSTGLIDMYAK 284


>ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  170 bits (431), Expect = 1e-40
 Identities = 90/145 (62%), Positives = 106/145 (73%)
 Frame = +1

Query: 85  FVGNSLLVIMYTLCGSMVEGKKLFGEMPVRSAV*WTVMISVYAKKGDVETSRLYFDNAPV 264
           FVGNSLLV MY    +M   +++F EMP  SAV WTVMI  YA  GDV+T+R  FD A V
Sbjct: 141 FVGNSLLV-MYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATV 199

Query: 265 KDRGIWGSMNSGYVQNNCFKEGLEMFRLIQSEGFEPDEAVFDSVLSASAH*GAMDIGIWI 444
           KD GIWG+M SGYVQNNCFKEGL MFRL+Q    EPDEA+  ++LSA AH GA+D GIWI
Sbjct: 200 KDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWI 259

Query: 445 HRYLDRKQSLLSIRLSMELIDMYAR 519
           HRYL R    L++R+S  LIDMYA+
Sbjct: 260 HRYLGRLGLPLTLRVSTGLIDMYAK 284