BLASTX nr result
ID: Coptis21_contig00018423
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00018423
(1662 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263663.2| PREDICTED: sister chromatid cohesion 1 prote... 112 1e-49
emb|CBI24843.3| unnamed protein product [Vitis vinifera] 103 4e-40
gb|AAG44843.1|AF281155_1 cohesion family protein SYN3 [Arabidops... 69 3e-24
ref|NP_191514.1| Sister chromatid cohesion 1 protein 3 [Arabidop... 69 2e-23
ref|XP_002513194.1| cohesin subunit rad21, putative [Ricinus com... 84 7e-15
>ref|XP_002263663.2| PREDICTED: sister chromatid cohesion 1 protein 3-like [Vitis
vinifera]
Length = 761
Score = 112 bits (281), Expect(3) = 1e-49
Identities = 73/203 (35%), Positives = 108/203 (53%), Gaps = 10/203 (4%)
Frame = +2
Query: 89 GSGQGLSDHVPVDQGEDPN*----NKTFQDFPEIETMLNDPRHDYGSDN------YHDLM 238
G G D P Q E N Q+ PE+E M D HD S+ + +
Sbjct: 243 GGNAGFQDPGPSHQMEQLNEMFNEETVPQEVPEMEVM-RDAVHDLQSERLPVWPEHGNDT 301
Query: 239 DDISGPSNQNIIDKENLTPIMEDGRDAEVHSLPPRIDTDPLSFGTLAQSLNNFVSSASLG 418
++ +Q + +KE L+P M D + SLP + ++P + ++ F S S G
Sbjct: 302 TELDRSLDQMLNEKEILSPNMPDILYSGEQSLPFQQRSEPPASAVSPEAPEIFDSHISFG 361
Query: 419 HVSLELVLQPTPSVEKKKANPRKRKLFFDTSVVLLNDFIREGLNNTSGLVRRQKNLPCSA 598
HVS L + TP VEK KA RKRK FD S+VL N +++ L ++SGL+R++K LPCSA
Sbjct: 362 HVSPALAIGSTPPVEKPKAKSRKRKQLFDVSLVLPNKLMKKALEDSSGLLRKKKRLPCSA 421
Query: 599 LDVWKCKKRARKEQIFLDSSISG 667
LD+WK ++RKE +F + S++G
Sbjct: 422 LDIWKINIKSRKENVFFEPSVTG 444
Score = 109 bits (272), Expect(3) = 1e-49
Identities = 71/147 (48%), Positives = 87/147 (59%), Gaps = 7/147 (4%)
Frame = +3
Query: 1134 EMETPMTHLEQQSHLERSGLSDIPERSNSTEGEV----FLDAD--TPATGRMENEVGTSS 1295
++ETP T +E Q +E +GLSDIPE NS E + FL+AD TP GT
Sbjct: 621 DLETPATFMEDQLGVENTGLSDIPELVNSAEVSLSELNFLEADDMTPT-----GSPGTQD 675
Query: 1296 QVHTLSVRTRAVAQYLKDQSPTTEGSXXXXXXXXXXXXXXXXTRRKCARMFFETLVLKSH 1475
V TLS+RTRAVAQYL++ SP S TR+ ARMFFETLVLK++
Sbjct: 676 -VSTLSIRTRAVAQYLQNHSPINPISEDPSMELSLNKILEGKTRKIAARMFFETLVLKNY 734
Query: 1476 GLIDVEQEEAYGDIALLLAP-LSNANF 1553
GL+DV+QEE YGDI L + P LS A F
Sbjct: 735 GLVDVQQEEPYGDITLKMTPKLSKARF 761
Score = 23.9 bits (50), Expect(3) = 1e-49
Identities = 42/169 (24%), Positives = 53/169 (31%), Gaps = 54/169 (31%)
Frame = +1
Query: 757 GLCPDLQDIFRKEI--SKAHTVPVEDTHVEATVPVDDTHV------------------EA 876
G+C DL + FR+++ K H E E V + E
Sbjct: 444 GMCEDLHNTFREDVISLKPHLAITEQAFPEPLVAQSPAPMPEKAFPEPSVARSPAPMPEE 503
Query: 877 TFPVDDTVPIDDTHVETR----GANSPVSM----LEIEHPQFERGND------------- 993
FP + P D E G SP M +EIE + GN
Sbjct: 504 AFPGPEVAPSPDAMPEEAIPEPGVQSPAPMPDLDIEIERLRDHEGNAGSNILPEIMPSPT 563
Query: 994 ---------YGSPFRGDDFTPFS----GGNIDTEPGTTILETEPLPSLD 1101
S RG DFTP S G +D GT T LP+ D
Sbjct: 564 RLIYSPTRFPSSSIRG-DFTPISTGDKGSELDPMVGTD-FGTRSLPTPD 610
>emb|CBI24843.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 103 bits (256), Expect(3) = 4e-40
Identities = 75/206 (36%), Positives = 106/206 (51%), Gaps = 13/206 (6%)
Frame = +2
Query: 89 GSGQGLSDHVPVDQGEDPN*----NKTFQDFPEIETMLNDPRHDYGSDN------YHDLM 238
G G D P Q E N Q+ PE+E M D HD S+ + +
Sbjct: 226 GGNAGFQDPGPSHQMEQLNEMFNEETVPQEVPEMEVM-RDAVHDLQSERLPVWPEHGNDT 284
Query: 239 DDISGPSNQNIIDKENLTPIMEDGRDAEVHSLPPRIDTDPLSFGTLAQSLN---NFVSSA 409
++ +Q + +KE L+P M D + SLP F A S+ N +S
Sbjct: 285 TELDRSLDQMLNEKEILSPNMPDILYSGEQSLP---------FQQRANSILPCLNLLSHV 335
Query: 410 SLGHVSLELVLQPTPSVEKKKANPRKRKLFFDTSVVLLNDFIREGLNNTSGLVRRQKNLP 589
S GHVS L + TP VEK KA RKRK FD S+VL N +++ L ++SGL+R++K LP
Sbjct: 336 S-GHVSPALAIGSTPPVEKPKAKSRKRKQLFDVSLVLPNKLMKKALEDSSGLLRKKKRLP 394
Query: 590 CSALDVWKCKKRARKEQIFLDSSISG 667
CSALD+WK ++RKE +F + S++G
Sbjct: 395 CSALDIWKINIKSRKENVFFEPSVTG 420
Score = 86.7 bits (213), Expect(3) = 4e-40
Identities = 59/141 (41%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
Frame = +3
Query: 1134 EMETPMTHLEQQSHLERSGLSDIPERSNSTEGEVFLDADTPATGRMENEVGTSSQVHTLS 1313
++ETP T +E Q +E +GLSDIPE NS E +LS
Sbjct: 597 DLETPATFMEDQLGVENTGLSDIPELVNSAEV-------------------------SLS 631
Query: 1314 VRTRAVAQYLKDQSPTTEGSXXXXXXXXXXXXXXXXTRRKCARMFFETLVLKSHGLIDVE 1493
V AVAQYL++ SP S TR+ ARMFFETLVLK++GL+DV+
Sbjct: 632 V---AVAQYLQNHSPINPISEDPSMELSLNKILEGKTRKIAARMFFETLVLKNYGLVDVQ 688
Query: 1494 QEEAYGDIALLLAP-LSNANF 1553
QEE YGDI L + P LS A F
Sbjct: 689 QEEPYGDITLKMTPKLSKARF 709
Score = 23.9 bits (50), Expect(3) = 4e-40
Identities = 42/169 (24%), Positives = 53/169 (31%), Gaps = 54/169 (31%)
Frame = +1
Query: 757 GLCPDLQDIFRKEI--SKAHTVPVEDTHVEATVPVDDTHV------------------EA 876
G+C DL + FR+++ K H E E V + E
Sbjct: 420 GMCEDLHNTFREDVISLKPHLAITEQAFPEPLVAQSPAPMPEKAFPEPSVARSPAPMPEE 479
Query: 877 TFPVDDTVPIDDTHVETR----GANSPVSM----LEIEHPQFERGND------------- 993
FP + P D E G SP M +EIE + GN
Sbjct: 480 AFPGPEVAPSPDAMPEEAIPEPGVQSPAPMPDLDIEIERLRDHEGNAGSNILPEIMPSPT 539
Query: 994 ---------YGSPFRGDDFTPFS----GGNIDTEPGTTILETEPLPSLD 1101
S RG DFTP S G +D GT T LP+ D
Sbjct: 540 RLIYSPTRFPSSSIRG-DFTPISTGDKGSELDPMVGTD-FGTRSLPTPD 586
>gb|AAG44843.1|AF281155_1 cohesion family protein SYN3 [Arabidopsis thaliana]
Length = 692
Score = 68.9 bits (167), Expect(3) = 3e-24
Identities = 51/121 (42%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Frame = +3
Query: 1188 GLSDIPERSNSTEGEVFLDADTPATGRMENEVGT--SSQVHTLSVRTRAVAQYLKDQS-- 1355
GLS + ER++ + + ++P VGT S L+ R RA+AQYLK +S
Sbjct: 574 GLSPVSERTDEELYFLEVGGNSP--------VGTPASQDSAALTGRARALAQYLKQRSSS 625
Query: 1356 -PTTEGSXXXXXXXXXXXXXXXXTRRKCARMFFETLVLKSHGLIDVEQEEAYGDIALLLA 1532
PTT S TR+ ARMFFETLVLKS GLID++Q+ YGDIAL L
Sbjct: 626 SPTT--SSHPSGDLSLSEILAGKTRKLAARMFFETLVLKSRGLIDMQQDRPYGDIALKLM 683
Query: 1533 P 1535
P
Sbjct: 684 P 684
Score = 59.3 bits (142), Expect(3) = 3e-24
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 8/174 (4%)
Frame = +2
Query: 170 PEIETMLNDPRHDYGSDNY-------HDLMDDISGPSNQNIIDKENLTP-IMEDGRDAEV 325
PEIE M D HD ++ D+ + + ++ + +KE P I E+ ++
Sbjct: 251 PEIERM-RDAAHDLSPTSHPSFAAQQQDVRVERTESLDETLNEKEPTIPSIDEEMLNSGR 309
Query: 326 HSLPPRIDTDPLSFGTLAQSLNNFVSSASLGHVSLELVLQPTPSVEKKKANPRKRKLFFD 505
HS L G+ + + A H S +LVLQP+P +++A RK FD
Sbjct: 310 HS------AFELRSGSPGSAAGSEEERADFVHPSPQLVLQPSPPQPQRRARKRKN---FD 360
Query: 506 TSVVLLNDFIREGLNNTSGLVRRQKNLPCSALDVWKCKKRARKEQIFLDSSISG 667
VL N I E L + S +R++K +P S L W+ ++RK+Q F + +G
Sbjct: 361 GVTVLTNKNISERLKDPSDTLRKRKKMPSSKLKFWRMNNQSRKDQNFNEPLFTG 414
Score = 31.6 bits (70), Expect(3) = 3e-24
Identities = 40/154 (25%), Positives = 57/154 (37%), Gaps = 40/154 (25%)
Frame = +1
Query: 751 FAGLCPDLQDIFRKEI--SKAHTVPVEDTHVE--ATVPVDDTHVEAT--FPVDDTVPIDD 912
F G DL+++F K+ SK H ++T E + P + VE P+ D+ D
Sbjct: 412 FTGFSDDLRNVFEKDYVASKPHLAVSDETLPEPASVSPTREAEVEINPVSPIPDSTNPDS 471
Query: 913 T--------------HVETRGANSPVSMLEIEHPQFERGNDYG----------------- 999
T R A++ E + P+ +D G
Sbjct: 472 TVQLSPAQKTEDVLDSAGPRPAHAESVATEAQSPRTFDNDDMGIEHLRDGGFPVYMPSPP 531
Query: 1000 ---SPFRGDDFTPFSGGNIDTEPGTTILETEPLP 1092
SPFR DDFT S GN +TE T T +P
Sbjct: 532 PRSSPFRTDDFTTQS-GNWETESYRTEPSTSTVP 564
>ref|NP_191514.1| Sister chromatid cohesion 1 protein 3 [Arabidopsis thaliana]
gi|30913284|sp|Q9FQ19.2|SCC13_ARATH RecName: Full=Sister
chromatid cohesion 1 protein 3; AltName: Full=SCC1
homolog 3; Short=AtRAD21-2
gi|18157647|gb|AAL62059.1|AF400128_1 RAD21-2 [Arabidopsis
thaliana] gi|6996291|emb|CAB75452.1| putative protein
[Arabidopsis thaliana] gi|332646418|gb|AEE79939.1| Sister
chromatid cohesion 1 protein 3 [Arabidopsis thaliana]
Length = 693
Score = 68.9 bits (167), Expect(3) = 2e-23
Identities = 51/121 (42%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Frame = +3
Query: 1188 GLSDIPERSNSTEGEVFLDADTPATGRMENEVGT--SSQVHTLSVRTRAVAQYLKDQS-- 1355
GLS + ER++ + + ++P VGT S L+ R RA+AQYLK +S
Sbjct: 575 GLSPVSERTDEELYFLEVGGNSP--------VGTPASQDSAALTGRARALAQYLKQRSSS 626
Query: 1356 -PTTEGSXXXXXXXXXXXXXXXXTRRKCARMFFETLVLKSHGLIDVEQEEAYGDIALLLA 1532
PTT S TR+ ARMFFETLVLKS GLID++Q+ YGDIAL L
Sbjct: 627 SPTT--SSHPSGDLSLSEILAGKTRKLAARMFFETLVLKSRGLIDMQQDRPYGDIALKLM 684
Query: 1533 P 1535
P
Sbjct: 685 P 685
Score = 56.6 bits (135), Expect(3) = 2e-23
Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Frame = +2
Query: 170 PEIETMLNDPRHDYGSDNY-------HDLMDDISGPSNQNIIDKENLTP-IMEDGRDAEV 325
PEIE M D HD ++ D+ + + ++ + +KE P I E+ ++
Sbjct: 251 PEIERM-RDAAHDLSPTSHPSFAAQQQDVRVERTESLDETLNEKEPTIPSIDEEMLNSGR 309
Query: 326 HSLPPRIDTDPLSFGTLAQSLNNFVSSASLGHVSLELVLQPTPSVEKKKANPRKRKLFFD 505
HS L G+ + + A H S +LVLQP+P + ++ RKRK F D
Sbjct: 310 HS------AFELRSGSPGSAAGSEEERADFVHPSPQLVLQPSPPPQPQR-RARKRKNF-D 361
Query: 506 TSVVLLNDFIREGLNNTSGLVRRQKNLPCSALDVWKCKKRARKEQIFLDSSISG 667
VL N I E L + S +R++K +P S L W+ ++RK+Q F + +G
Sbjct: 362 GVTVLTNKNISERLKDPSDTLRKRKKMPSSKLKFWRMNNQSRKDQNFNEPLFTG 415
Score = 31.6 bits (70), Expect(3) = 2e-23
Identities = 40/154 (25%), Positives = 57/154 (37%), Gaps = 40/154 (25%)
Frame = +1
Query: 751 FAGLCPDLQDIFRKEI--SKAHTVPVEDTHVE--ATVPVDDTHVEAT--FPVDDTVPIDD 912
F G DL+++F K+ SK H ++T E + P + VE P+ D+ D
Sbjct: 413 FTGFSDDLRNVFEKDYVASKPHLAVSDETLPEPASVSPTREAEVEINPVSPIPDSTNPDS 472
Query: 913 T--------------HVETRGANSPVSMLEIEHPQFERGNDYG----------------- 999
T R A++ E + P+ +D G
Sbjct: 473 TVQLSPAQQTEDVLDSAGPRPAHAESVATEAQSPRTFDNDDMGIEHLRDGGFPVYMPSPP 532
Query: 1000 ---SPFRGDDFTPFSGGNIDTEPGTTILETEPLP 1092
SPFR DDFT S GN +TE T T +P
Sbjct: 533 PRSSPFRTDDFTTQS-GNWETESYRTEPSTSTVP 565
>ref|XP_002513194.1| cohesin subunit rad21, putative [Ricinus communis]
gi|223547692|gb|EEF49185.1| cohesin subunit rad21,
putative [Ricinus communis]
Length = 774
Score = 79.7 bits (195), Expect(2) = 7e-15
Identities = 51/111 (45%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Frame = +3
Query: 1134 EMETPMTHLEQQSHLERSGLSDIPERSNSTEGE--VFLDADTPATGRMENEVGTSSQVHT 1307
++ETP T LE+Q +GLSDIPE N+ E E FL+AD G S + +
Sbjct: 626 DLETPRTFLEEQFDAGHTGLSDIPEFVNTAEAEDLYFLEADNSPAGS-----PGSQGIDS 680
Query: 1308 LSVRTRAVAQYLKDQSPTTEGSXXXXXXXXXXXXXXXXTRRKCARMFFETL 1460
LSVRTRAVAQYLK SP T S TR+ CARMFFETL
Sbjct: 681 LSVRTRAVAQYLKRNSPITPVSEDLSGDLSLNRILQGKTRKLCARMFFETL 731
Score = 28.5 bits (62), Expect(2) = 7e-15
Identities = 37/127 (29%), Positives = 47/127 (37%), Gaps = 39/127 (30%)
Frame = +1
Query: 838 EATVPVDDT-----HVEATFPVDDTVPIDDTHVETRGA----NSPVSM------------ 954
+AT P T + AT P T I ++ T A N P M
Sbjct: 489 DATSPARSTVAILESIAATSPTSATEMISESRTTTSPAPATENIPEPMFAQPSVPEVEPD 548
Query: 955 LEIEHPQFERGNDYG---------------SPFRGDDFTPFSGGNIDTEP---GTTILET 1080
LEIE + G+D SPFR DDFTP S ++ +E T T
Sbjct: 549 LEIERLRQHEGHDANILLPELLPSPGRFPPSPFRRDDFTPNSMKSLGSETAHWAGTSAGT 608
Query: 1081 EPLPSLD 1101
E LP+ D
Sbjct: 609 EVLPTPD 615
Score = 84.3 bits (207), Expect = 8e-14
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 8/174 (4%)
Frame = +2
Query: 170 PEIETMLNDPRHDYGSDN----YHDLMDDISGPS---NQNIIDKENLTPIMEDGRDAEVH 328
PEIE +L D + S+N + +D S P+ +Q + +K+ +P ED +
Sbjct: 273 PEIE-VLRDHVDVFSSENLPPVFTHQQNDASEPNISLDQGLNEKKTPSPFKEDVIPSGGQ 331
Query: 329 SLP-PRIDTDPLSFGTLAQSLNNFVSSASLGHVSLELVLQPTPSVEKKKANPRKRKLFFD 505
S P + P S A + F S S G VS EL ++ TP+V++ + RKRK FFD
Sbjct: 332 SSPFQQRSESPNSASRDAPGI--FDSHISFGRVSPELAIRSTPAVQQPRPRTRKRKHFFD 389
Query: 506 TSVVLLNDFIREGLNNTSGLVRRQKNLPCSALDVWKCKKRARKEQIFLDSSISG 667
+ VL N F+++ L N+ ++R+++ +P +AL +WK + RKEQ+ + ++G
Sbjct: 390 EATVLTNKFMKKALENSKDILRKRREIPSTALGIWKLRNSLRKEQVLSEPLLTG 443