BLASTX nr result
ID: Coptis21_contig00018412
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00018412
(705 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002510330.1| ubiquitin-protein ligase, putative [Ricinus ... 146 5e-33
ref|XP_002302466.1| predicted protein [Populus trichocarpa] gi|2... 142 5e-32
ref|XP_003550361.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g... 142 9e-32
ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago trunc... 138 1e-30
ref|XP_003589307.1| F-box/FBD/LRR-repeat protein [Medicago trunc... 138 1e-30
>ref|XP_002510330.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223551031|gb|EEF52517.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 426
Score = 146 bits (368), Expect = 5e-33
Identities = 82/194 (42%), Positives = 116/194 (59%), Gaps = 1/194 (0%)
Frame = -1
Query: 705 WRYKWMYIPEIVFDSRSIPLFPPSASLQGQRNLVDFVTHVLSFHSGTLQKFGMSGYLESS 526
WRYKW IP +VFD++ + + P + LV+ + HVL H+G +QKF +S
Sbjct: 48 WRYKWAKIPHLVFDNKCVSI-PSQDQTLIKDKLVNIIDHVLLLHNGPIQKFKLSHRDLLG 106
Query: 525 CNDVDRWILLLSRKSVKMITLEFPQGNQYKVPSALFSIQTLEELKLKRSILKLPSHTIGF 346
+D+DRWIL LSR S+K LE +G +YKVPS+LFS + L L+L +L+ P GF
Sbjct: 107 VSDIDRWILHLSRSSIKEFILEIWKGQRYKVPSSLFSFEHLIHLELFNCLLQPPLTFKGF 166
Query: 345 KNLVDLDLWKVTLTNETIASIIVDCP-LEKLTLIYCDGFSCLNVCAPKLIMFFLYSPCGS 169
++L LDL +TLT ++I CP LE+LTL+ DGF+ LN+ AP L F +
Sbjct: 167 RSLKSLDLQHITLTQNVFENLIFSCPLLERLTLMNFDGFTHLNINAPNLQFFDIGGVYDD 226
Query: 168 IYFDNTPQLRIASI 127
+ F+NT QL + SI
Sbjct: 227 VTFENTFQLTLVSI 240
>ref|XP_002302466.1| predicted protein [Populus trichocarpa] gi|222844192|gb|EEE81739.1|
predicted protein [Populus trichocarpa]
Length = 505
Score = 142 bits (359), Expect = 5e-32
Identities = 88/198 (44%), Positives = 113/198 (57%), Gaps = 5/198 (2%)
Frame = -1
Query: 705 WRYKWMYIPEIVFDSRSIPLFPPSASLQGQ----RNLVDFVTHVLSFHSGTLQKFGMSGY 538
WRYKW IP IVFDS+ I S S Q Q LV+ + H+L H+G + KF +S
Sbjct: 127 WRYKWSQIPHIVFDSQGI-----SISSQDQTTIKNKLVNIIDHILLLHNGPIYKFKLSHC 181
Query: 537 LESSCNDVDRWILLLSRKSVKMITLEFPQGNQYKVPSALFSIQTLEELKLKRSILKLPSH 358
+ +D+DRWIL LSR S K LE +G QYK+PS LFS + L L+L +LK P
Sbjct: 182 DLLAVSDIDRWILHLSRGSTKEFVLEIWKGQQYKLPSCLFSFKNLVYLELFNCLLKPPLA 241
Query: 357 TIGFKNLVDLDLWKVTLTNETIASIIVDCP-LEKLTLIYCDGFSCLNVCAPKLIMFFLYS 181
GF+NL +LDL VTL E +I C LE+LTLI DGF+ LN+ AP L F +
Sbjct: 242 FKGFRNLKNLDLQHVTLAQEVFEKLISSCAMLERLTLINFDGFTHLNINAPNLQFFDVGG 301
Query: 180 PCGSIYFDNTPQLRIASI 127
+ F+NT L + SI
Sbjct: 302 VFDDVSFENTFVLALVSI 319
>ref|XP_003550361.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Glycine
max]
Length = 427
Score = 142 bits (357), Expect = 9e-32
Identities = 82/194 (42%), Positives = 111/194 (57%), Gaps = 1/194 (0%)
Frame = -1
Query: 705 WRYKWMYIPEIVFDSRSIPLFPPSASLQGQRNLVDFVTHVLSFHSGTLQKFGMSGYLESS 526
WRYKW +P +VFD+ + + + + L+ + HVL HSG + KF +S
Sbjct: 49 WRYKWATLPILVFDTHCVSVASQDHMII-KNKLLRIIDHVLLLHSGPINKFKLSHRDLIG 107
Query: 525 CNDVDRWILLLSRKSVKMITLEFPQGNQYKVPSALFSIQTLEELKLKRSILKLPSHTIGF 346
D+DRW L L RKS+K LE +G +YK+ S LFS Q+L L+L LK PS GF
Sbjct: 108 VTDIDRWTLHLCRKSIKEFVLEIWKGQRYKIHSCLFSCQSLTHLELFNCWLKPPSTFQGF 167
Query: 345 KNLVDLDLWKVTLTNETIASIIVDCP-LEKLTLIYCDGFSCLNVCAPKLIMFFLYSPCGS 169
KNL LDL VTL + ++I CP LE+LTL+ DGF+ LN+ AP L+ F +
Sbjct: 168 KNLKSLDLQHVTLAQDVFENLISSCPLLERLTLMNFDGFTNLNIDAPNLLFFDIGGKFED 227
Query: 168 IYFDNTPQLRIASI 127
I F+NT QL + SI
Sbjct: 228 ISFENTFQLAVVSI 241
>ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
gi|355478356|gb|AES59559.1| F-box/FBD/LRR-repeat protein
[Medicago truncatula]
Length = 428
Score = 138 bits (348), Expect = 1e-30
Identities = 95/236 (40%), Positives = 124/236 (52%), Gaps = 1/236 (0%)
Frame = -1
Query: 705 WRYKWMYIPEIVFDSRSIPLFPPSASLQGQRNLVDFVTHVLSFHSGTLQKFGMSGYLESS 526
WRYKW +P +VFDS+ I L + L + HVL HSG ++KF +S
Sbjct: 49 WRYKWATLPNLVFDSQCISDTSEDL-LVIKSKLSRIIDHVLLLHSGPIKKFKLSHRELIG 107
Query: 525 CNDVDRWILLLSRKSVKMITLEFPQGNQYKVPSALFSIQTLEELKLKRSILKLPSHTIGF 346
D+DRW L L+R+ VK LE +G +YK+PS LFS Q L L+L L PS GF
Sbjct: 108 VTDIDRWTLHLTRRPVKEFVLEIWKGQRYKIPSCLFSCQGLHHLELFNCWLIPPSTFQGF 167
Query: 345 KNLVDLDLWKVTLTNETIASIIVDCP-LEKLTLIYCDGFSCLNVCAPKLIMFFLYSPCGS 169
+NL LDL VTL+ + ++I CP LE+LTL+ DGF+ LN+ AP L F +
Sbjct: 168 RNLKSLDLQHVTLSQDAFENLISTCPLLERLTLMNFDGFNYLNIHAPNLQFFDIGGKFED 227
Query: 168 IYFDNTPQLRIASIEMLPMMVGGIPLPRHLVTSRLDARLTGLVNVQELCIFKNFMK 1
I F NT QL + SI L + H TS L L L +Q L I F+K
Sbjct: 228 ISFKNTSQLAVVSIG-LYVNFESSQGRLHGRTSNLVEFLIHLPRIQRLEIQSYFLK 282
>ref|XP_003589307.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
gi|355478355|gb|AES59558.1| F-box/FBD/LRR-repeat protein
[Medicago truncatula]
Length = 660
Score = 138 bits (348), Expect = 1e-30
Identities = 95/236 (40%), Positives = 124/236 (52%), Gaps = 1/236 (0%)
Frame = -1
Query: 705 WRYKWMYIPEIVFDSRSIPLFPPSASLQGQRNLVDFVTHVLSFHSGTLQKFGMSGYLESS 526
WRYKW +P +VFDS+ I L + L + HVL HSG ++KF +S
Sbjct: 281 WRYKWATLPNLVFDSQCISDTSEDL-LVIKSKLSRIIDHVLLLHSGPIKKFKLSHRELIG 339
Query: 525 CNDVDRWILLLSRKSVKMITLEFPQGNQYKVPSALFSIQTLEELKLKRSILKLPSHTIGF 346
D+DRW L L+R+ VK LE +G +YK+PS LFS Q L L+L L PS GF
Sbjct: 340 VTDIDRWTLHLTRRPVKEFVLEIWKGQRYKIPSCLFSCQGLHHLELFNCWLIPPSTFQGF 399
Query: 345 KNLVDLDLWKVTLTNETIASIIVDCP-LEKLTLIYCDGFSCLNVCAPKLIMFFLYSPCGS 169
+NL LDL VTL+ + ++I CP LE+LTL+ DGF+ LN+ AP L F +
Sbjct: 400 RNLKSLDLQHVTLSQDAFENLISTCPLLERLTLMNFDGFNYLNIHAPNLQFFDIGGKFED 459
Query: 168 IYFDNTPQLRIASIEMLPMMVGGIPLPRHLVTSRLDARLTGLVNVQELCIFKNFMK 1
I F NT QL + SI L + H TS L L L +Q L I F+K
Sbjct: 460 ISFKNTSQLAVVSIG-LYVNFESSQGRLHGRTSNLVEFLIHLPRIQRLEIQSYFLK 514