BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018408
         (492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275304.2| PREDICTED: DNA mismatch repair protein Msh2 ...   178   4e-43
ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [...   178   5e-43
ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|2...   176   2e-42
emb|CBI15412.3| unnamed protein product [Vitis vinifera]              173   1e-41
ref|XP_002463122.1| hypothetical protein SORBIDRAFT_02g038230 [S...   165   3e-39

>ref|XP_002275304.2| PREDICTED: DNA mismatch repair protein Msh2 [Vitis vinifera]
          Length = 902

 Score =  178 bits (452), Expect = 4e-43
 Identities = 85/115 (73%), Positives = 100/115 (86%)
 Frame = -1

Query: 492  EPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSSISITSNDAKEEVGSKRKRVCG 313
            EPGACDQSFGIHVAEFANFPESVV LAREKAAELEDFS   I SNDA ++VGSKRKR   
Sbjct: 787  EPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPTEIVSNDASDKVGSKRKRESS 846

Query: 312  PDDISRGAARAHKFLQDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 148
            PDDISRGAARAH+FL++FS LP+++MDL++ L+ VSKL+N+L KDA +C WL+QF
Sbjct: 847  PDDISRGAARAHQFLKEFSDLPLEKMDLKEALQQVSKLKNDLEKDAVNCHWLQQF 901


>ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [Ricinus communis]
            gi|223549157|gb|EEF50646.1| DNA mismatch repair protein
            MSH2, putative [Ricinus communis]
          Length = 936

 Score =  178 bits (451), Expect = 5e-43
 Identities = 86/115 (74%), Positives = 99/115 (86%)
 Frame = -1

Query: 492  EPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSSISITSNDAKEEVGSKRKRVCG 313
            EPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFS  +I SND  E+VGSKR R C 
Sbjct: 821  EPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSPNAIVSNDTTEKVGSKRNRKCD 880

Query: 312  PDDISRGAARAHKFLQDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 148
            PDD+SRGAARAHKFL++FS LP++ MDL++ L+ VSKL+  L KDAA+C WL+QF
Sbjct: 881  PDDVSRGAARAHKFLKEFSDLPLETMDLKEALQQVSKLKEGLEKDAANCQWLKQF 935


>ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|222858604|gb|EEE96151.1|
            predicted protein [Populus trichocarpa]
          Length = 944

 Score =  176 bits (446), Expect = 2e-42
 Identities = 84/115 (73%), Positives = 99/115 (86%)
 Frame = -1

Query: 492  EPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSSISITSNDAKEEVGSKRKRVCG 313
            EPGACDQSFGIHVAEFANFPESVV LAREKAAELEDFS  +I S+DA+EEVGSKRKR C 
Sbjct: 829  EPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPTAIISDDAREEVGSKRKRECN 888

Query: 312  PDDISRGAARAHKFLQDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 148
             DD+S+GAARAH+FL+DFS LP+D MDL+Q L  + KL+++L KDA +C WL+QF
Sbjct: 889  MDDMSKGAARAHRFLKDFSDLPLDTMDLKQALLQIGKLKDDLEKDAVNCHWLQQF 943


>emb|CBI15412.3| unnamed protein product [Vitis vinifera]
          Length = 945

 Score =  173 bits (438), Expect = 1e-41
 Identities = 85/118 (72%), Positives = 100/118 (84%), Gaps = 3/118 (2%)
 Frame = -1

Query: 492  EPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSSISITSNDAKEE---VGSKRKR 322
            EPGACDQSFGIHVAEFANFPESVV LAREKAAELEDFS   I SNDA ++   VGSKRKR
Sbjct: 827  EPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPTEIVSNDASDKGLKVGSKRKR 886

Query: 321  VCGPDDISRGAARAHKFLQDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 148
               PDDISRGAARAH+FL++FS LP+++MDL++ L+ VSKL+N+L KDA +C WL+QF
Sbjct: 887  ESSPDDISRGAARAHQFLKEFSDLPLEKMDLKEALQQVSKLKNDLEKDAVNCHWLQQF 944


>ref|XP_002463122.1| hypothetical protein SORBIDRAFT_02g038230 [Sorghum bicolor]
            gi|241926499|gb|EER99643.1| hypothetical protein
            SORBIDRAFT_02g038230 [Sorghum bicolor]
          Length = 942

 Score =  165 bits (418), Expect = 3e-39
 Identities = 79/115 (68%), Positives = 99/115 (86%)
 Frame = -1

Query: 492  EPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSSISITSNDAKEEVGSKRKRVCG 313
            EPGACDQSFGIHVAEFANFPE+VVALA+ KAAELEDFS+    S+D+K+EVGSKRKRV  
Sbjct: 827  EPGACDQSFGIHVAEFANFPEAVVALAKSKAAELEDFSTTPTFSDDSKDEVGSKRKRVFS 886

Query: 312  PDDISRGAARAHKFLQDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 148
            PDD++RGAARA  FL+DF++LP+DEMD  + +E V+K++++L KDAAD  WL+QF
Sbjct: 887  PDDVTRGAARARLFLEDFAALPVDEMDRSKIVEMVTKMKSDLQKDAADNPWLQQF 941