BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018357
         (2017 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containi...   615   e-173
ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containi...   613   e-173
ref|XP_002522032.1| pentatricopeptide repeat-containing protein,...   578   e-162
ref|XP_002325369.1| predicted protein [Populus trichocarpa] gi|2...   570   e-160
ref|XP_002871814.1| pentatricopeptide repeat-containing protein ...   566   e-159

>ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial-like [Cucumis sativus]
            gi|449518358|ref|XP_004166209.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial-like [Cucumis sativus]
          Length = 455

 Score =  615 bits (1586), Expect = e-173
 Identities = 293/428 (68%), Positives = 353/428 (82%), Gaps = 3/428 (0%)
 Frame = +1

Query: 232  NSQQHSREGVSNDDYFAAIHHISNIVRRDFYMERTLQKMQI-NMTSELVYRVLRSCNKSG 408
            NS  +     S DDYFAAIHHIS+IVRRDFYMERTL K++I N+ SELV+RVLR+C+ SG
Sbjct: 27   NSLVNGSTAPSKDDYFAAIHHISHIVRRDFYMERTLNKLRISNLNSELVFRVLRACSNSG 86

Query: 409  INSFRFFNWA-RNQPRYEPTTLEFEELIKILGKNKNWETMWKVAEQMKKMGFVLTPDTFS 585
              SFRFFNWA  + P Y+PTTLEFEEL+K L + + + TMWKV  QMK     ++P+T S
Sbjct: 87   TESFRFFNWACSHNPSYQPTTLEFEELVKTLARTRKYTTMWKVLLQMKTQNLKISPETIS 146

Query: 586  LIIESYGKNGLVDKAVEVFNRM-KNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIR 762
             II+ YGK GLVD AV +FN+  K+ +C QT+ VYN+LLFALCEVK F GAYALIRR+IR
Sbjct: 147  FIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIR 206

Query: 763  KGGVPDKRTYSILVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEA 942
            KG  PDK+TY  LV GWCSAGK+KEAQ+FLEEMS+KGFNPP+RGRDLL++GLL+AGYLE+
Sbjct: 207  KGVTPDKKTYGTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLES 266

Query: 943  AKGLVRKMTKEGFLPDITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPDISTYKVMIS 1122
            AK +VRKMTKEG +PDI TFNSL++ IC  GEV+FC+ +F +VCKLGL PDI+TYK++I 
Sbjct: 267  AKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIP 326

Query: 1123 AVSKLGRMDEAFRLLYCSIEDGHKPFPSLYAPILKGLCRLGQFDDAFSFFRDMKAQGHPP 1302
            A SK+GR+DEAFRLL+C IEDGH PFPSLY PILKG+C+ GQFDDAF FF DMK +GHPP
Sbjct: 327  ATSKVGRIDEAFRLLHCCIEDGHVPFPSLYGPILKGMCKRGQFDDAFCFFGDMKHKGHPP 386

Query: 1303 NRPVYIMLIKMCARGGRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHCGKHDLAKRIE 1482
            NRPVY MLI MC RGGRFV+AANYLMEM E+ L P  + FD++TDGLK+CGKHDLAK+IE
Sbjct: 387  NRPVYTMLITMCGRGGRFVDAANYLMEMAELGLPPISRCFDMVTDGLKNCGKHDLAKKIE 446

Query: 1483 QLEISLRG 1506
            QLE+S+RG
Sbjct: 447  QLEVSIRG 454


>ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial [Vitis vinifera]
            gi|296085168|emb|CBI28663.3| unnamed protein product
            [Vitis vinifera]
          Length = 454

 Score =  613 bits (1582), Expect = e-173
 Identities = 297/445 (66%), Positives = 358/445 (80%), Gaps = 1/445 (0%)
 Frame = +1

Query: 175  NPNFKFLKTLTTQSHQIPPNSQQHSREGVSNDDYFAAIHHISNIVRRDFYMERTLQKMQI 354
            +P    LKTLTT +  +              DDYFA +HHIS IVRRDFY+ERTL K+ I
Sbjct: 19   SPILTHLKTLTTITTHLQNTITS------KKDDYFAVVHHISAIVRRDFYLERTLNKLPI 72

Query: 355  NMTSELVYRVLRSCNKSGINSFRFFNWARNQPRYEPTTLEFEELIKILGKNKNWETMWKV 534
            ++TS+LVYRVLRSC  SG  S RFFNWAR+   Y+PTTLE+EEL+K L + K ++ MWK+
Sbjct: 73   SVTSDLVYRVLRSCPNSGTESLRFFNWARSHLSYQPTTLEYEELLKTLARTKQFQPMWKI 132

Query: 535  AEQMKKMGFVLTPDTFSLIIESYGKNGLVDKAVEVFNRMKN-FNCEQTIGVYNSLLFALC 711
            A QM+     L+P   S IIE +GK+GLVD+AVEVFN+ K+  NC QTI VYNSLLFALC
Sbjct: 133  AHQMQ----TLSPTVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEVYNSLLFALC 188

Query: 712  EVKNFQGAYALIRRLIRKGGVPDKRTYSILVNGWCSAGKLKEAQDFLEEMSRKGFNPPVR 891
            EVK F GAYALIRR+IRKG  P+K+TYS+LVNGWC+AGK+KEAQDFLEEMSRKGFNPPVR
Sbjct: 189  EVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFLEEMSRKGFNPPVR 248

Query: 892  GRDLLIDGLLSAGYLEAAKGLVRKMTKEGFLPDITTFNSLLEAICEGGEVEFCVGLFRDV 1071
            GRDLL+DGLL+AGYLEAAK +VRKMTKEG  PD+ T NS+LEAIC+ GE EFC+ ++ DV
Sbjct: 249  GRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKAGEAEFCIDIYNDV 308

Query: 1072 CKLGLHPDISTYKVMISAVSKLGRMDEAFRLLYCSIEDGHKPFPSLYAPILKGLCRLGQF 1251
            C+LG+ P++ TYK+MI A  K GR+DEAFR+L+ SIEDGH+PFPSLYAPI+K LCR GQF
Sbjct: 309  CRLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPIIKALCRNGQF 368

Query: 1252 DDAFSFFRDMKAQGHPPNRPVYIMLIKMCARGGRFVEAANYLMEMIEMKLSPKPQSFDLI 1431
            DDAF FF DMK +GHPPNRPVY MLI MC RGGRFV+AANYL+EM E+ L+P  + FD++
Sbjct: 369  DDAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDAANYLVEMTELNLTPISRCFDMV 428

Query: 1432 TDGLKHCGKHDLAKRIEQLEISLRG 1506
            TDGLK+CGKHDLA++IEQLE+SLRG
Sbjct: 429  TDGLKNCGKHDLARKIEQLEVSLRG 453


>ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223538836|gb|EEF40436.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 451

 Score =  578 bits (1491), Expect = e-162
 Identities = 285/459 (62%), Positives = 356/459 (77%), Gaps = 3/459 (0%)
 Frame = +1

Query: 133  LFLLPHFSPK-TLNPNPNFKFLKTLTTQSHQIPPNSQQHSREGVSNDDYFAAIHHISNIV 309
            LF+LP  +   TL P  + K L + +T +               + D YFA IHHI+NIV
Sbjct: 7    LFILPKTTATVTLQPLRHLKVLASTSTNN---------------TKDAYFALIHHITNIV 51

Query: 310  RRDFYMERTLQKMQINMTSELVYRVLRSCNKSGINSFRFFNWARNQPRYEPTTLEFEELI 489
            RRDFY ERTL K+   +TSELV+RVLR+C++S   S RFFNW+R    Y PT++E+EELI
Sbjct: 52   RRDFYPERTLNKLNAPVTSELVFRVLRACSRSPTESLRFFNWSRAY--YTPTSIEYEELI 109

Query: 490  KILGKNKNWETMWKVAEQMKKMG--FVLTPDTFSLIIESYGKNGLVDKAVEVFNRMKNFN 663
            KIL K+K + +MWK+  QMK     F ++ +T   IIE YG++GL+D+AVEVFN+  + N
Sbjct: 110  KILAKSKRYSSMWKLITQMKDQNPQFSISSETVRSIIEEYGRSGLIDQAVEVFNQCNSLN 169

Query: 664  CEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRTYSILVNGWCSAGKLKEAQ 843
            CEQ + +YNSLLFALCEVK F GAYAL+RRLIRKG  P+K TYS+LVNGWCS GK KEAQ
Sbjct: 170  CEQNVDIYNSLLFALCEVKLFHGAYALVRRLIRKGLAPNKTTYSVLVNGWCSNGKFKEAQ 229

Query: 844  DFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMTKEGFLPDITTFNSLLEAI 1023
             FLEEMS+KGFNPPVRGRDLLI+GLL+AGY E+AK +V KM+KEGF+PD+ TFN L+EAI
Sbjct: 230  LFLEEMSKKGFNPPVRGRDLLIEGLLNAGYFESAKEMVFKMSKEGFVPDVNTFNCLIEAI 289

Query: 1024 CEGGEVEFCVGLFRDVCKLGLHPDISTYKVMISAVSKLGRMDEAFRLLYCSIEDGHKPFP 1203
            C  GEV+FCV ++  + KLG  PDI++YK++I AVSK+G++DEAF+LL  SIEDGHKPFP
Sbjct: 290  CNSGEVDFCVDMYYSLRKLGFCPDINSYKILIPAVSKVGKIDEAFKLLNNSIEDGHKPFP 349

Query: 1204 SLYAPILKGLCRLGQFDDAFSFFRDMKAQGHPPNRPVYIMLIKMCARGGRFVEAANYLME 1383
             LYAPI+KG+CR GQFDDAF FF +MK +GHPPNRPVY MLI MC RGG++VEAANYL+E
Sbjct: 350  GLYAPIIKGMCRRGQFDDAFCFFGEMKVKGHPPNRPVYTMLITMCGRGGKYVEAANYLVE 409

Query: 1384 MIEMKLSPKPQSFDLITDGLKHCGKHDLAKRIEQLEISL 1500
            M EM L+P  + FD++TDGLK+CGKHDLAKRIEQLE+S+
Sbjct: 410  MTEMGLTPISRCFDMVTDGLKNCGKHDLAKRIEQLEVSV 448


>ref|XP_002325369.1| predicted protein [Populus trichocarpa] gi|222862244|gb|EEE99750.1|
            predicted protein [Populus trichocarpa]
          Length = 422

 Score =  570 bits (1469), Expect = e-160
 Identities = 274/419 (65%), Positives = 345/419 (82%), Gaps = 4/419 (0%)
 Frame = +1

Query: 262  SNDDYFAAIHHISNIVRRDFYMERTLQKMQINMTSELVYRVLRSCNKSGINSFRFFNWAR 441
            + D YF+ IH+I+NI+R++ Y ERTL K+ + +TSELV+RVLR+C+ S   S RFFNWAR
Sbjct: 6    NRDAYFSLIHNITNIIRKEVYPERTLNKLNLPITSELVFRVLRACSNSPSESLRFFNWAR 65

Query: 442  NQPRYEPTTLEFEELIKILGKNKNWETMWKVAEQMK-KMG--FVLTPDTFSLIIESYGKN 612
            +   Y PTT+E+EELI  L +NK + +MWK+  Q+K  +G  F ++ DT   IIE YGK+
Sbjct: 66   SY--YSPTTIEYEELIITLVRNKKYASMWKLIAQVKDNLGDKFSVSSDTVCSIIEEYGKH 123

Query: 613  GLVDKAVEVFNRM-KNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRT 789
            GL+D+AVEVFN+  ++ NC+  + VYNSLLFALCEVK F GAYAL+RR+IRKG VPDKRT
Sbjct: 124  GLIDQAVEVFNKCSRSLNCQHNVCVYNSLLFALCEVKMFHGAYALVRRMIRKGIVPDKRT 183

Query: 790  YSILVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMT 969
            Y +LVNGWCS+GKL+EA+ FLEEMS+KGFNPPVRGRDLLI+GLL+AGYLE+AK +VR+M 
Sbjct: 184  YGVLVNGWCSSGKLREAKGFLEEMSKKGFNPPVRGRDLLIEGLLNAGYLESAKDMVRRMM 243

Query: 970  KEGFLPDITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPDISTYKVMISAVSKLGRMD 1149
            KEG +PD+ TFNS++EAIC  GEV+FCV ++  VCKLG  PDI++YK++I AVSK+GR+D
Sbjct: 244  KEGLVPDVNTFNSMVEAICNAGEVDFCVDMYHSVCKLGFCPDINSYKILIPAVSKVGRID 303

Query: 1150 EAFRLLYCSIEDGHKPFPSLYAPILKGLCRLGQFDDAFSFFRDMKAQGHPPNRPVYIMLI 1329
            EAFRLL+  IEDGHKPFPSLYAPI+KG+ R GQFDDAF FF +MK +GHPPNRPVY M+I
Sbjct: 304  EAFRLLHNLIEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKVKGHPPNRPVYTMMI 363

Query: 1330 KMCARGGRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHCGKHDLAKRIEQLEISLRG 1506
             MC RGG+ VEAANYL+EM E+ L P  + FD++TDGLK+CGKHDLAKRIEQLE+SLRG
Sbjct: 364  TMCGRGGKHVEAANYLVEMTEIGLVPISRCFDMVTDGLKNCGKHDLAKRIEQLEVSLRG 422


>ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297317651|gb|EFH48073.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 459

 Score =  567 bits (1460), Expect = e-159
 Identities = 272/423 (64%), Positives = 339/423 (80%), Gaps = 1/423 (0%)
 Frame = +1

Query: 241  QHSREGVSNDDYFAAIHHISNIVRRDFYMERTLQKMQINMTSELVYRVLRSCNKSGINSF 420
            Q S    +  DYFAAI+H+ NIVRR+ + ER+L  +++ +TSE V+RVLR+ ++S  +S 
Sbjct: 36   QSSDSTPTKGDYFAAINHVVNIVRREIHPERSLNSLRLPVTSEFVFRVLRATSRSANDSL 95

Query: 421  RFFNWARNQPRYEPTTLEFEELIKILGKNKNWETMWKVAEQMKKMGFVLTPDTFSLIIES 600
            RFFNWAR+ P Y PT++E+EEL K L  +K +E+MWK+ +QMK +   ++ +T   IIE 
Sbjct: 96   RFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQ 155

Query: 601  YGKNGLVDKAVEVFNRM-KNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVP 777
            YGKNG VD+AVE+FN + K   C+QT+ VYN+LL ALC+VK F GAYALIRR+IRKG  P
Sbjct: 156  YGKNGHVDQAVELFNGVPKTLGCQQTVDVYNALLHALCDVKMFHGAYALIRRMIRKGLKP 215

Query: 778  DKRTYSILVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLV 957
            DKRTY+ILVNGWCSAGK+KEAQ+FL+EMSRKGFNPP RGRDLLI+GLL+AGYLE+AK +V
Sbjct: 216  DKRTYAILVNGWCSAGKMKEAQEFLDEMSRKGFNPPARGRDLLIEGLLNAGYLESAKEIV 275

Query: 958  RKMTKEGFLPDITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPDISTYKVMISAVSKL 1137
             KMTK GF+PDI TFN+L+EAI + GEVEFC+ ++   CKLGL  DI TYK +I AVSK+
Sbjct: 276  DKMTKGGFVPDILTFNTLIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKI 335

Query: 1138 GRMDEAFRLLYCSIEDGHKPFPSLYAPILKGLCRLGQFDDAFSFFRDMKAQGHPPNRPVY 1317
            G++DEAFRLL   +EDGHKPFPSLYAPI+KG+CR G FDDAFSFF DMK + HPPNRPVY
Sbjct: 336  GKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVY 395

Query: 1318 IMLIKMCARGGRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHCGKHDLAKRIEQLEIS 1497
             MLI MC RGG+FV+AANYL+EM EM L P  + FD++TDGLK+ GKHDLA RIEQLE+ 
Sbjct: 396  TMLITMCGRGGKFVDAANYLVEMTEMGLVPISRCFDMVTDGLKNSGKHDLAMRIEQLEVQ 455

Query: 1498 LRG 1506
            LRG
Sbjct: 456  LRG 458