BLASTX nr result

ID: Coptis21_contig00018252 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018252
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281541.2| PREDICTED: THO complex subunit 2-like [Vitis...   157   6e-37
emb|CBI26799.3| unnamed protein product [Vitis vinifera]              157   6e-37
ref|XP_004142861.1| PREDICTED: THO complex subunit 2-like [Cucum...   151   6e-35
ref|XP_002325475.1| predicted protein [Populus trichocarpa] gi|2...   149   2e-34
ref|XP_002328963.1| predicted protein [Populus trichocarpa] gi|2...   149   2e-34

>ref|XP_002281541.2| PREDICTED: THO complex subunit 2-like [Vitis vinifera]
          Length = 1849

 Score =  157 bits (398), Expect = 6e-37
 Identities = 81/101 (80%), Positives = 89/101 (88%)
 Frame = +3

Query: 3   GELAIQKCKMVLDSVEFSDKESNEELSSVLADIVTQMAQDLTMPGEYRVRLIKVAKSLVE 182
           GEL + KCK+ LDSVEFSDKE++EEL+S  ADIVTQMA DLTMPGE R RLIK+AK LVE
Sbjct: 48  GELPLHKCKVALDSVEFSDKEADEELASNFADIVTQMALDLTMPGENRARLIKLAKWLVE 107

Query: 183 YGLVPLKLFQERCEEEFLWESEMIKIKAQDLKAKEVRVNTR 305
             LVPL+LFQERCEEEFLWESEMIKIKAQ+LK KEVRVNTR
Sbjct: 108 STLVPLRLFQERCEEEFLWESEMIKIKAQELKNKEVRVNTR 148


>emb|CBI26799.3| unnamed protein product [Vitis vinifera]
          Length = 1767

 Score =  157 bits (398), Expect = 6e-37
 Identities = 81/101 (80%), Positives = 89/101 (88%)
 Frame = +3

Query: 3   GELAIQKCKMVLDSVEFSDKESNEELSSVLADIVTQMAQDLTMPGEYRVRLIKVAKSLVE 182
           GEL + KCK+ LDSVEFSDKE++EEL+S  ADIVTQMA DLTMPGE R RLIK+AK LVE
Sbjct: 48  GELPLHKCKVALDSVEFSDKEADEELASNFADIVTQMALDLTMPGENRARLIKLAKWLVE 107

Query: 183 YGLVPLKLFQERCEEEFLWESEMIKIKAQDLKAKEVRVNTR 305
             LVPL+LFQERCEEEFLWESEMIKIKAQ+LK KEVRVNTR
Sbjct: 108 STLVPLRLFQERCEEEFLWESEMIKIKAQELKNKEVRVNTR 148


>ref|XP_004142861.1| PREDICTED: THO complex subunit 2-like [Cucumis sativus]
           gi|449506883|ref|XP_004162874.1| PREDICTED: THO complex
           subunit 2-like [Cucumis sativus]
          Length = 1887

 Score =  151 bits (381), Expect = 6e-35
 Identities = 73/101 (72%), Positives = 86/101 (85%)
 Frame = +3

Query: 3   GELAIQKCKMVLDSVEFSDKESNEELSSVLADIVTQMAQDLTMPGEYRVRLIKVAKSLVE 182
           G+L  QKCK  LDSVEFS+K S EEL S  AD++TQ+AQD+T+ GEYR RL+K+AK LVE
Sbjct: 48  GDLPFQKCKAALDSVEFSEKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAKWLVE 107

Query: 183 YGLVPLKLFQERCEEEFLWESEMIKIKAQDLKAKEVRVNTR 305
              VPL+LFQERCEEEFLWE+EMIKIKAQ+LK+KEVRVNTR
Sbjct: 108 SAFVPLRLFQERCEEEFLWEAEMIKIKAQELKSKEVRVNTR 148


>ref|XP_002325475.1| predicted protein [Populus trichocarpa] gi|222862350|gb|EEE99856.1|
           predicted protein [Populus trichocarpa]
          Length = 1836

 Score =  149 bits (377), Expect = 2e-34
 Identities = 78/101 (77%), Positives = 82/101 (81%)
 Frame = +3

Query: 3   GELAIQKCKMVLDSVEFSDKESNEELSSVLADIVTQMAQDLTMPGEYRVRLIKVAKSLVE 182
           GEL  QKCK  LDSVEF DK S   L S  ADI+TQMAQDLTM GEYR RLIK+AK LVE
Sbjct: 50  GELPFQKCKAALDSVEFVDKVSAVGLGSNFADIITQMAQDLTMSGEYRSRLIKLAKWLVE 109

Query: 183 YGLVPLKLFQERCEEEFLWESEMIKIKAQDLKAKEVRVNTR 305
             LVPL+ FQERCEEEFLWE+EMIKIKAQDLK KEVRVNTR
Sbjct: 110 SALVPLRFFQERCEEEFLWEAEMIKIKAQDLKGKEVRVNTR 150


>ref|XP_002328963.1| predicted protein [Populus trichocarpa] gi|222839197|gb|EEE77548.1|
           predicted protein [Populus trichocarpa]
          Length = 1805

 Score =  149 bits (377), Expect = 2e-34
 Identities = 78/101 (77%), Positives = 82/101 (81%)
 Frame = +3

Query: 3   GELAIQKCKMVLDSVEFSDKESNEELSSVLADIVTQMAQDLTMPGEYRVRLIKVAKSLVE 182
           GEL  QKCK  LDSVEF DK S   L S  ADI+TQMAQDLTM GEYR RLIK+AK LVE
Sbjct: 50  GELPFQKCKAALDSVEFVDKMSAVGLGSNFADIITQMAQDLTMSGEYRSRLIKLAKWLVE 109

Query: 183 YGLVPLKLFQERCEEEFLWESEMIKIKAQDLKAKEVRVNTR 305
             LVPL+ FQERCEEEFLWE+EMIKIKAQDLK KEVRVNTR
Sbjct: 110 SALVPLRFFQERCEEEFLWEAEMIKIKAQDLKGKEVRVNTR 150


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