BLASTX nr result

ID: Coptis21_contig00018193 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018193
         (605 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002871003.1| PWWP domain-containing protein [Arabidopsis ...    56   4e-06

>ref|XP_002871003.1| PWWP domain-containing protein [Arabidopsis lyrata subsp. lyrata]
           gi|297316840|gb|EFH47262.1| PWWP domain-containing
           protein [Arabidopsis lyrata subsp. lyrata]
          Length = 628

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 35/154 (22%)
 Frame = -3

Query: 357 DIVWAKANDSNRYWPGSIIK------------RVNGKLLVSFFDCKTTNWIYDSEIRYFE 214
           D+VWAK   S  +WPG +I             +  G LLV++F   T  W   S+++ F 
Sbjct: 105 DLVWAKIR-SYPWWPGQVIDASVASKAAKKHFKKKGNLLVAYFGDCTFAWNNASQVKPFH 163

Query: 213 NNYMPIMLDIGGMKLRNAIDCALNEFVNRLTLEYSCAC-----------ENDGNEGRGLV 67
            N+  +       + R+AIDCAL+E   R+    SC+C           +N  N G    
Sbjct: 164 QNFSQMQEQSNLAEFRDAIDCALDEVSRRVEFGLSCSCVSVEAYNKLKTQNIINAGIRED 223

Query: 66  KKV------------FEPAEALGFVCRMAVCPFF 1
            +V            FEPA+ + ++ R+A  P +
Sbjct: 224 SRVRYGGDKLSDAISFEPAKLMDYMKRLACFPSY 257


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