BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018133
         (390 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containi...   173   7e-51
emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]   173   7e-51
ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containi...   169   8e-49
ref|XP_002533731.1| pentatricopeptide repeat-containing protein,...   166   1e-47
ref|XP_002329666.1| predicted protein [Populus trichocarpa] gi|2...   160   5e-47

>ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera] gi|297735424|emb|CBI17864.3| unnamed
           protein product [Vitis vinifera]
          Length = 821

 Score =  173 bits (438), Expect(2) = 7e-51
 Identities = 82/110 (74%), Positives = 91/110 (82%), Gaps = 4/110 (3%)
 Frame = -3

Query: 319 DDESNGCVPNRIAWNTMLAMCGNKGAQKYVNRVFREMKNCGFEP----FNTLISAYGRCG 152
           D  SNGC PN + WNTMLAMCGNKG  KYVNRVFREMK+CGFEP    FN LI AYGRCG
Sbjct: 445 DMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCG 504

Query: 151 SGIVALKMYDEIIRVGFRPSVTTYNSLLNALARRGDWKAAEAVILDMKSK 2
           S I  +KMY+E+I+ GF P VTTYN+LLNALARRGDW+AAE+VILDMKSK
Sbjct: 505 SQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSK 554



 Score = 52.8 bits (125), Expect(2) = 7e-51
 Identities = 23/29 (79%), Positives = 25/29 (86%)
 Frame = -1

Query: 390 GCVPTVCTYNAILGMLGKKSRSEEMMSQM 304
           GCVP VCTYNAILGMLGKKSR EEM+  +
Sbjct: 415 GCVPNVCTYNAILGMLGKKSRLEEMIDML 443


>emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score =  173 bits (438), Expect(2) = 7e-51
 Identities = 82/110 (74%), Positives = 91/110 (82%), Gaps = 4/110 (3%)
 Frame = -3

Query: 319 DDESNGCVPNRIAWNTMLAMCGNKGAQKYVNRVFREMKNCGFEP----FNTLISAYGRCG 152
           D  SNGC PN + WNTMLAMCGNKG  KYVNRVFREMK+CGFEP    FN LI AYGRCG
Sbjct: 445 DMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCG 504

Query: 151 SGIVALKMYDEIIRVGFRPSVTTYNSLLNALARRGDWKAAEAVILDMKSK 2
           S I  +KMY+E+I+ GF P VTTYN+LLNALARRGDW+AAE+VILDMKSK
Sbjct: 505 SQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSK 554



 Score = 52.8 bits (125), Expect(2) = 7e-51
 Identities = 23/29 (79%), Positives = 25/29 (86%)
 Frame = -1

Query: 390 GCVPTVCTYNAILGMLGKKSRSEEMMSQM 304
           GCVP VCTYNAILGMLGKKSR EEM+  +
Sbjct: 415 GCVPNVCTYNAILGMLGKKSRLEEMIDML 443


>ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
           gi|449507064|ref|XP_004162923.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score =  169 bits (428), Expect(2) = 8e-49
 Identities = 80/113 (70%), Positives = 92/113 (81%), Gaps = 4/113 (3%)
 Frame = -3

Query: 328 IRRDDESNGCVPNRIAWNTMLAMCGNKGAQKYVNRVFREMKNCGFEP----FNTLISAYG 161
           I  D   NGC PNRI WNT+LAMCG+KG  K+VN VFREMKNCGFEP    FNTLISAYG
Sbjct: 465 ILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYG 524

Query: 160 RCGSGIVALKMYDEIIRVGFRPSVTTYNSLLNALARRGDWKAAEAVILDMKSK 2
           RCGS + A KMYDE+++ GF P  TTYN+LLNALARRGDWKAAE+V+LDM++K
Sbjct: 525 RCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNK 577



 Score = 49.7 bits (117), Expect(2) = 8e-49
 Identities = 21/26 (80%), Positives = 24/26 (92%)
 Frame = -1

Query: 390 GCVPTVCTYNAILGMLGKKSRSEEMM 313
           GCVP VCTYN+IL +LGKKSRSEEM+
Sbjct: 438 GCVPNVCTYNSILALLGKKSRSEEMI 463



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
 Frame = -3

Query: 328 IRRDDESNGCVPNRIAWNTMLAMCGNKGAQKYVNRVFREMKNCGFEP----FNTLISAYG 161
           I ++ E N C  + + +N ++A     G  +    V   M   G  P    + T+I+AYG
Sbjct: 360 ILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYG 419

Query: 160 RCGSGIVALKMYDEIIRVGFRPSVTTYNSLLNALARRGDWKAAEAVILDMK 8
           R G  + AL++++++ + G  P+V TYNS+L  L ++   +    ++ DM+
Sbjct: 420 RAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMR 470


>ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526356|gb|EEF28650.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 835

 Score =  166 bits (419), Expect(2) = 1e-47
 Identities = 78/106 (73%), Positives = 88/106 (83%), Gaps = 4/106 (3%)
 Frame = -3

Query: 307 NGCVPNRIAWNTMLAMCGNKGAQKYVNRVFREMKNCGFEP----FNTLISAYGRCGSGIV 140
           NGC PN I WNTMLAMCG KG  KYVN+VFREMKNCGFEP    FNTLISAYGRCGS   
Sbjct: 462 NGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNND 521

Query: 139 ALKMYDEIIRVGFRPSVTTYNSLLNALARRGDWKAAEAVILDMKSK 2
           A KM++E+I+ GF P + TYN+LLNALARRGDWKAAE+VILDM++K
Sbjct: 522 AAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNK 567



 Score = 49.3 bits (116), Expect(2) = 1e-47
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = -1

Query: 390 GCVPTVCTYNAILGMLGKKSRSEEMM 313
           GCVP V TYNA+LGMLGKKS SEEMM
Sbjct: 428 GCVPNVATYNAVLGMLGKKSLSEEMM 453



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
 Frame = -3

Query: 313 ESNGCVPNRIAWNTMLAMCGNKGAQKYVNRVFREMKNCGFEP----FNTLISAYGRCGSG 146
           E N C P+ + +N ++A     G  +    V   M + G  P    + T+I+AYGR G  
Sbjct: 355 EENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDI 414

Query: 145 IVALKMYDEIIRVGFRPSVTTYNSLLNALARR 50
             AL+M+D+++ +G  P+V TYN++L  L ++
Sbjct: 415 DKALEMFDQMMELGCVPNVATYNAVLGMLGKK 446


>ref|XP_002329666.1| predicted protein [Populus trichocarpa] gi|222870547|gb|EEF07678.1|
           predicted protein [Populus trichocarpa]
          Length = 821

 Score =  160 bits (404), Expect(2) = 5e-47
 Identities = 76/110 (69%), Positives = 89/110 (80%), Gaps = 4/110 (3%)
 Frame = -3

Query: 319 DDESNGCVPNRIAWNTMLAMCGNKGAQKYVNRVFREMKNCGFEP----FNTLISAYGRCG 152
           D + +GC PNRI WNTML+MCGNKG  KYV RVF+EMK+CGFEP    FNTLI+A GRCG
Sbjct: 445 DMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCG 504

Query: 151 SGIVALKMYDEIIRVGFRPSVTTYNSLLNALARRGDWKAAEAVILDMKSK 2
           S I A K+YDE++  GF PSV TYN+LLNALARRGDW+ AE+VI DMK+K
Sbjct: 505 SDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNK 554



 Score = 52.8 bits (125), Expect(2) = 5e-47
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = -1

Query: 390 GCVPTVCTYNAILGMLGKKSRSEEMM 313
           GC P VCTYNAILGMLGKKS+SEEMM
Sbjct: 415 GCAPNVCTYNAILGMLGKKSQSEEMM 440



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
 Frame = -3

Query: 328 IRRDDESNGCVPNRIAWNTMLAMCGNKGAQKYVNRVFREMKNCGFEP----FNTLISAYG 161
           I ++ E N C P+ + +N ++A     G  +    +   M   G +P    + T+I+AYG
Sbjct: 337 IMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYG 396

Query: 160 RCGSGIVALKMYDEIIRVGFRPSVTTYNSLLNALARRGDWKAAEAVILDMK 8
           R      AL +YD++   G  P+V TYN++L  L ++   +    ++ DMK
Sbjct: 397 RAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMK 447